Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04534 ATGTCAATGTCTATGAGCTGCTTTTGCTTGAAGAAAGCTACACCAAAGACTAAGCTAGAACTATCCACCGTTCTTGCTTCGGAAACATCCTTTACTGTGAATGAGATTGAGGCTTTGCTTTGCTCGTTTAAGAAACTAAGCAGTGCAATTGTTGATGATGACTTCCTTCACAAGGAGGAGTTCCATCTTGCACTTTTTAATAATGATAGCAAGCAGAATCTATTTGCAGATAGGATATTTGATATGTTTGACATCAAGCGTGATGGAGTAATTAGCTTTGGGGAGTTTGTTCGCTCACTGAGTATCTTTCATCCAAATGCCTCTGAAGAGAAGAAAATTGAATTTGCATTTAGATTATTTGACCTTACACAGAATGGATACATTGAGCATCACGAGGTGAGTTACTACTCATTCTGTGGTCTTTCATTCGTTTACATTTTCACCTATAACCACTTTTATAGTTTATGTTTCGTTCTTATTATTCATGAATTCCCTTCTGTGCTTAATGGTGCACTCAAGTTGAAGGAAATGGTGTTGGCTGCTCTCACTGAATCAGATGTTACAGTTCCTGATGATGTTGTTGAAGCAATTACAATGCTGGAGGTTGATTCAAAAGGAGATGGTAAGATAGATAACGAAGAGTGGAGAGATTATGTGACACAAAATCCTTCTCTTCTGAAGATCATGACTCTACCCTTTCTAAAGGATATAACCCTCGCATTTCCCAGCTTTATTTTGCACTCTGAGATGGAAGACTAG 759 0.3808 MSMSMSCFCLKKATPKTKLELSTVLASETSFTVNEIEALLCSFKKLSSAIVDDDFLHKEEFHLALFNNDSKQNLFADRIFDMFDIKRDGVISFGEFVRSLSIFHPNASEEKKIEFAFRLFDLTQNGYIEHHEVSYYSFCGLSFVYIFTYNHFYSLCFVLIIHEFPSVLNGALKLKEMVLAALTESDVTVPDDVVEAITMLEVDSKGDGKIDNEEWRDYVTQNPSLLKIMTLPFLKDITLAFPSFILHSEMED 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04534 252 Pfam EF hand 200 216 IPR002048 GO:0005509
Vimu11g04534 252 Pfam EF hand 77 98 IPR002048 GO:0005509
Vimu11g04534 252 ProSiteProfiles EF-hand calcium-binding domain profile. 201 225 IPR002048 GO:0005509
Vimu11g04534 252 SUPERFAMILY EF-hand 25 244 IPR011992 -
Vimu11g04534 252 ProSiteProfiles EF-hand calcium-binding domain profile. 108 143 IPR002048 GO:0005509
Vimu11g04534 252 Gene3D - 22 252 - -
Vimu11g04534 252 PANTHER CALCINEURIN B 6 252 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vimu11g04534 252 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04534 Vimu-Chr11 66194269 66201070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04534 5 252 EF-hand Containing Proteins AT4G17615 46.215 5.58e-71 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04534 K06268 - vra:106766823 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04534 11 66194269 66201070 Vimu11g04534 11 66194269 66201070 ECH