Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04533 ATGGGGTGTTGTTGCTCTAAAGAGCGACTTCATCTTCAAGATCCAGCACTTCTTGCTTCCCAAACCTATTTTAAAATTTCTGAAATTGAAGCATTGCATGTTCTGTTCAAGAAATTAAGCAGCTCCATGGTGGACGACGGGGTTATCAGTAAAGAAGAGTTTCAGCTTGGCATACTTGGAAGCAGCAAGAAACGAAGCTTATTTACTGACAGGTTATTTCAATTATTTGACTCCAAAAGAGATGGGGTGATAGAATTTGGAGAGTTCATTCGAGGTCTAAGTGTCTTCCACCCAGCAGCACCACAAGCACAAAAGGCAGATTTTGCATTTCGACTCTATGATATATGTCAAAAAGGCTTTATTGAACGAGAGCAGGTAAAAGAGATGATATGTGCACTACTGAGTGAGTCAGATCTGGTTCTGTCTAATGACATAATTGAAGTGGTACTTGATAAGACCTTCGAAGAAGCAGACTCGAAAGGAGATGGAAGGATTGATCCAGAGGAGTGGCAAGAATTTGTTGGTCGAAAGCCATCCTTATTGAGGAATATGACTATTCCTTATCTGAAGTAA 573 0.4031 MGCCCSKERLHLQDPALLASQTYFKISEIEALHVLFKKLSSSMVDDGVISKEEFQLGILGSSKKRSLFTDRLFQLFDSKRDGVIEFGEFIRGLSVFHPAAPQAQKADFAFRLYDICQKGFIEREQVKEMICALLSESDLVLSNDIIEVVLDKTFEEADSKGDGRIDPEEWQEFVGRKPSLLRNMTIPYLK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04533 190 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Vimu11g04533 190 FunFam calcineurin B-like protein 3 14 190 - -
Vimu11g04533 190 Pfam EF hand 150 174 IPR002048 GO:0005509
Vimu11g04533 190 Pfam EF hand 72 91 IPR002048 GO:0005509
Vimu11g04533 190 SMART efh_1 149 177 IPR002048 GO:0005509
Vimu11g04533 190 SMART efh_1 68 96 IPR002048 GO:0005509
Vimu11g04533 190 SMART efh_1 105 133 IPR002048 GO:0005509
Vimu11g04533 190 CDD EFh 105 174 IPR002048 GO:0005509
Vimu11g04533 190 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Vimu11g04533 190 Gene3D - 14 190 - -
Vimu11g04533 190 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Vimu11g04533 190 PANTHER CALCINEURIN B 2 190 IPR045198 GO:0005509|GO:0019722|GO:0019900
Vimu11g04533 190 SUPERFAMILY EF-hand 16 188 IPR011992 -
Vimu11g04533 190 PRINTS Recoverin family signature 72 93 - -
Vimu11g04533 190 PRINTS Recoverin family signature 165 185 - -
Vimu11g04533 190 PRINTS Recoverin family signature 119 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04533 Vimu-Chr11 66190622 66191983 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04533 22 190 EF-hand Containing Proteins AT5G24270 60.947 4.91e-76 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04533 K06268 - vra:106766823 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04533 11 66190622 66191983 Vimu11g04533 11 66190622 66191983 ECH