Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04514 TTGCCATTTCCTTTTCACTCCCACATGGAGAAGCTTATCTGCATGTTCCTTTTCCTTCTTCTTCTGGCCCCTCCTTTTACCTCTGCTGGCCATGACTATGGTCAAGCTCTCAGCAAGAGCCTTCTCTTCTTTGAAGCTCAGAGATCTGGCTACCTTCCCCACAACCAGAGAGTCACATGGAGAGCACATTCTGGTTTGCAAGATGGCAAAGCTAGCGGGGTGGATCTAGTTGGAGGGTACTACGATGCAGGGGACAATGTGAAGTTCGGATTACCCATGGCGTTCACCGTTACGATGATGTCGTGGAGCATAATTGAATACGGCAAACAAATGGCTGCAAGCGGTGAGCTTGGCCACGCCATGGAAGCAGTTAAGTGGGGTACGGACTACTTCATCAAAGCACACCCTCAGGCCAATGTTCTCTATGGAGAGGTGGGAGACGGAAACACTGACCATTACTGCTGGCAAAGGCCAGAGGACATGACAACGGACCGTCACGCTTACAAGATCGATCCAAGCAATCCCGGGTCGGATCTCGCCGGAGAAACCGCCGCCGCTATGGCCGCTGCATCCATTGTTTTCCGACGCTCTAACCCTGCTTATTCTCACGAACTTCTAACTCACGCCTATCAGTTGTTCGATTTTGCTGACAAATACAGAGGCAAATATGACAGCAGCATTACCGTTGCCCAGAAGTATTACAGATCAATCAGTGGCTACAATGATGAATTGCTCTGGGCTGCTGCTTGGTTGTATCAAGCATCTAACAATCAGTATTACTTGGATTACCTTGGAAGAAACGGTGATTCCATGGGTGGAACTGGTTGGACCATGACTGAATTTGGTTGGGATGTTAAGTATGCCGGCGTTCAGACATTGGTTGCCAAGTTCTTGTTGCAGGGCAAAGCTGGCCATCATGCACCAGTTTTCGAGAGATATCAGCAGAAGGCCGAATCTTTCATGTGTTCGTGCCTTGGAAAGGGTTCTCGCAATGTGCAGAAGACTCCCGGTGGCCTCATTTTCCGCCAGAGATGGAACAACATGCAGTTTGTCACAAGTGCCTCGTTTTTAGCCACTGTCTATTCTGACTACCTTGCTTCATCTGGTAGGAACTTGAGATGTAATTCAGGCAATGTTGCCCCTGCTGAACTTCTCTCCCTTGCAAAGTCTCAGGTGGACTATCTTCTTGGAAACAACCCAAGAGCAACTAGTTACATGGTGGGCTATGGAAACAACTTCCCACAAAGGGTTCATCACCGAGGTTCATCCATTGTTTCGATCAAGGTTAACCCTTCATTTGTCAGCTGCCGTGGAGGTTATGATACTTGGTTTAGCAGCAAAAGGAGTGACCCCAACCTACTCACCGGTGCTCTTGTTGGTGGACCTGATGCGTATGATGACTTTGCTGATGAAAGAGATAACTATGAGCAGACAGAGCCAGCAACCTATAACAACGCTCCTCTCATCGGTATTCTAGCACGTCTGAATGGAGGTCATGGTGGCTATAACCAGCTTCTTCCAGTTGTTCCCGCTACTAAACCTGTTGTTATCAATCCTCGACCATCCCCCAATACCAAGACAACTCCATCTCCAGCTTCATGGTCAGGCCCAATTTCTATTGAACAGAAAATGACCACCTCATGGGTTGCCAATGGAAAAACTTATTATAGATACTCAACAGTGGTGACAAACAAATCTAACAGGAGTCTCAATTCTCTCAAACTTTCAATCTCCAAGCTTTATGGTCCAATCTGGGGTCTGACAAAGTCTGGTGATTCCTACACATTCCCATCATGGCTCAGCTCACTAGCTGCAGGCAAAAGCCTTGAATTTGTCTACATCCATTCTACTTCTCCAGCAGATGTCTCTGTGGCTAACTACGTGTTGGCCTGA 1893 0.477 MPFPFHSHMEKLICMFLFLLLLAPPFTSAGHDYGQALSKSLLFFEAQRSGYLPHNQRVTWRAHSGLQDGKASGVDLVGGYYDAGDNVKFGLPMAFTVTMMSWSIIEYGKQMAASGELGHAMEAVKWGTDYFIKAHPQANVLYGEVGDGNTDHYCWQRPEDMTTDRHAYKIDPSNPGSDLAGETAAAMAAASIVFRRSNPAYSHELLTHAYQLFDFADKYRGKYDSSITVAQKYYRSISGYNDELLWAAAWLYQASNNQYYLDYLGRNGDSMGGTGWTMTEFGWDVKYAGVQTLVAKFLLQGKAGHHAPVFERYQQKAESFMCSCLGKGSRNVQKTPGGLIFRQRWNNMQFVTSASFLATVYSDYLASSGRNLRCNSGNVAPAELLSLAKSQVDYLLGNNPRATSYMVGYGNNFPQRVHHRGSSIVSIKVNPSFVSCRGGYDTWFSSKRSDPNLLTGALVGGPDAYDDFADERDNYEQTEPATYNNAPLIGILARLNGGHGGYNQLLPVVPATKPVVINPRPSPNTKTTPSPASWSGPISIEQKMTTSWVANGKTYYRYSTVVTNKSNRSLNSLKLSISKLYGPIWGLTKSGDSYTFPSWLSSLAAGKSLEFVYIHSTSPADVSVANYVLA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04514 630 Pfam Carbohydrate binding domain CBM49 538 615 IPR019028 GO:0030246
Vimu11g04514 630 PANTHER ENDO-1,4-BETA-GLUCANASE 15 496 - -
Vimu11g04514 630 FunFam Endoglucanase 29 500 - -
Vimu11g04514 630 SMART CBM49_2 538 618 IPR019028 GO:0030246
Vimu11g04514 630 Pfam Glycosyl hydrolase family 9 33 492 IPR001701 GO:0004553|GO:0005975
Vimu11g04514 630 SUPERFAMILY Six-hairpin glycosidases 31 509 IPR008928 GO:0005975
Vimu11g04514 630 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 468 486 IPR033126 -
Vimu11g04514 630 MobiDBLite consensus disorder prediction 517 536 - -
Vimu11g04514 630 MobiDBLite consensus disorder prediction 518 536 - -
Vimu11g04514 630 Gene3D - 30 498 IPR012341 GO:0005975
Vimu11g04514 630 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 394 420 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04514 Vimu-Chr11 66075046 66079211 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04514 25 630 Glycoside Hydrolase AT1G64390 80.528 0.0 1022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04514 K01179 - gmx:100801949 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04514 11 66075046 66079211 Vimu11g04514 11 66075046 66079211 ECH