Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04492 ATGTTTGTGGGCACGTGGAATGATAATTTTGACGGCATGGACGAAGAATTGGAGATTGGTGAAGGTGTGCAAGTGCAACATCAGAACAAGGATGATGGCTATTCACTAAACCCTGAATTCCTCGGAATATTAAAACCCCAAGAATATGATGAAATTCCAGAAGATAAGAATACGGCTGAAGGAAGGGAACATTTGCATCCAGGTCTATTTTCTGATGGCGGTGGTGGTGTCATGGTTGAAGAGTTAATGGTGAAAAGTTGCAACGGTTCTACCCTAGAAATCGGTACTTTGAATCCAGGGTCTTTGCATGATAGCCGGAGTCCATGGCGGCATAATTATCAGCCGTTTTCTGATTCGCGTGTGGGAAGGGATGGTATTATAGCTAGAAAGAGTGTTCAAGCTACATCTAGTGCTTGGGAAGATTTTGGGCCCATGTCTTCCCGAGACATATTAGCTAGAAAATCAGTCAATTATGATCATGGCAATGTCGTGCAGCACTTGTCTGCTGATGACCACACAGCTGAGCAAAAAGAGGATGAAGGTGATGCTCGCGAAGTAATGCAAACAAAAACTGCACACAAATCAGGATTTTCAGAGTATTTTAGTAGAAGTACATTGAAGGGAAAGGGTATTGTATGTAAAGGTCCATCTTCTAATGGTTTATATGTCGTGTCCAGAGATCAGAACCTGATGAAGTCTGGCATTGATATTCAGATGGATTCTAATGCATTCCCGAGCTCCGATTTAAAGATTGCAAAGTTTCCTCATAATGCTACTGTGCCAAGATTTGGTGGGTCTGACACTGATGGTGTGATTTTGAGAGAATGGTTGAAATCTAGGCACCACAAAGGAAGCAAAACAGAGCATTTAAGTATATTCAGAAAAATTGCAGACTTGGTTGGCGGTTTTCATTCTCAGGGAGTTGCAATGCCCAATCTGTACCCTTCTTATATTAAATTGCTACCATCCAACCATGTTATGCATCTTGGGTTGCCAACTCAGAAACACAAATTAGATAGTGTTGTGAATTCTGAAGTTCTTCAGCTAGAGAATTCCCTTATTAGAAAAAGGCTGTCGGAGAAAGTAAAATCTTCCTCTCATAATTTGCGGATGAAGAAACAGAAATTCGGTGACAATGTTAGAGTTGCTGGTGATAAGAGTCAGTGCCCTCCTATGACTGACTTGTATCATCAAATTGCCAATGATGTTAAAGTCAATGCAGTGGTATCACAAGATCATTGCAATGAATACAAGGAAGATATCCAATTTTCTAAGCATAATATTCGGAGACCGTCTCCCCTCCCTCACATATCTAATGCAGGTCAATTCCAATTGACTTCCTCAAACGAAGGATTGGAAGAAGAATGGTATACAAGTCCTGAGGGTGGTTGCACAATATTATCAAATATCTACTGTCTGGGGGTCCTTTTTTTTGAGTTATTTAATCATTTTGATTCAGAAAGAACACATACTGCTGCAATGTCTGCTCTTCGTGGTAGGATTCTTCCCTCAGCTTTCCTATCAGAGTATCCTAAGGAAGCTGCATTTTGCCTTAGGATGCTGCATCCTGAACCATCATCACGTCCAACAATAAGGAAGTTAAGGAGTGAAGGGGAAGAAATGAATTGGCCTGCCGGGCAGCCTGAGAGTGGAGAGGCAGATAAAAAGATCCTGAACACATGCAAGGAGATTCTACAATCTGATGTGATAAATGGAACAAAAGTGGTGGACTGTGAGGAATTACTCTCAAGTCTTAACCAATATGATGCAGAATCAGAATTGCTATTGCATTTCCTCATCTCTCTGAAAAAGCAGAAACACGTGGATGCCCACAAATTGACTGAGGAAATCAGATGCATGGAATCAGATATAAAGGAGGTGGAAAGAAGGCACGGTTTGAGACTATCCTTGGCTTCCTCGAGCTTGAAGAACAACTCATCCTGTGGAATAGAGGGTGTATCTCTTCTCAAAGAAGCTTCAAGTGCAGAAATATTACCACCAGTATACCCGGTTTCTAAAGAAAATGAACTGAGACTGATGAAAAATATGTGTCTACTTGAAAATGCTTACTTTTCTATGAGATCTACAATTAAGCTTCCTGGAACAGAAACAGCAACCCGCCCAGATAAAGATGTGCTGAGAAATTCTGACAACTTCTGTGTAGCTCAAAAAGAAATGGAAAAACATACAGATACTTTAGGAGCTTTCTTTGACGGTTTGTGCAAGTATGCGCGTTATCAAAAGTTTGAAGTGCGGGGCATACTAAGAACTGCTGATTTTAACAATCCAGTAAATGTAATCTGTTCTCTGAGTTTTGATAGAGATGGAGACTACTTTGCTGCTGCTGGGATATCGAAGAAAATAAAAGTTTTTCAGTTCGATGCAATTTTCAATAACTCTGTCGACATCCATTATCCTGTAGTTGAGATGGTAAACAAATCAAGGCTAAGTTGTGTTTGCTGGAATAGCTACGTCCAGAACTATCTTGCCTCCACAGACTATGATGGTGTAGTTAAGGTTTGTGTGACTTGCTCACTAGATTTTATGCCATTTGAATTATTGCTAACATCATTGGCATACATTCCTTGCTGTATCCGTGAGTTACATTCTGGCATATGCAGTTTCGAATCAGCATTACTAATTGCATTGCCTAAATGGATGCATTTTCAGCTATGGGATGCCAATACAGGTCAAGAGTTTTCTCGTCTCACCGAACATGAAAAGAGGTCCTGGTCTGTTGATTTCTCTATTGTATGCCCTACTAAATTTGCCAGTGGGAGTGATGACTGTTCTTTGAAACTGTGGAGTATCAATGAGTTCTCTGCTCATTCATCTCATATGCTGGCCTTTGGATCCGCGGATAATTCGGCTTATTGCTATGATCTTCGCTTTCTTAGAACCCCTTGGTGTGTTTTGAGTGGCCATCGTAAATCTGTAAGTTTTGTCAAATTCTTGGACTCTGAAACACTAGTTTCTGCATCAACCGATAATACCTTGAAGATCTGGGATCTCAACAGAACCTGTCCTGTGGGTCGGTCAACTAGTGCTTGCAGCTTAACTCTGACTGGACATACCAATGAGAAGAATTTTGTGGGTTTATCAGTTGCTGATGGATATATAACATGTGGTTCAGAAACAAATGAGGTCTATGCCTACTATAAATCTTTTCCCATGCCAGTCATTTCGCACAAGTTCGGGTCCATTGATCCTGTTTCTGGTAAAGAGACCGATGATGACTATAGTCAATTTGTTTCAAGTGTGTGCTGGAGAGGGAAATCAGACACGCTTATTGCAGCTAATACAAGTGGATGTATAAAAGTTTTACAGATGGTTTGA 3336 0.4065 MFVGTWNDNFDGMDEELEIGEGVQVQHQNKDDGYSLNPEFLGILKPQEYDEIPEDKNTAEGREHLHPGLFSDGGGGVMVEELMVKSCNGSTLEIGTLNPGSLHDSRSPWRHNYQPFSDSRVGRDGIIARKSVQATSSAWEDFGPMSSRDILARKSVNYDHGNVVQHLSADDHTAEQKEDEGDAREVMQTKTAHKSGFSEYFSRSTLKGKGIVCKGPSSNGLYVVSRDQNLMKSGIDIQMDSNAFPSSDLKIAKFPHNATVPRFGGSDTDGVILREWLKSRHHKGSKTEHLSIFRKIADLVGGFHSQGVAMPNLYPSYIKLLPSNHVMHLGLPTQKHKLDSVVNSEVLQLENSLIRKRLSEKVKSSSHNLRMKKQKFGDNVRVAGDKSQCPPMTDLYHQIANDVKVNAVVSQDHCNEYKEDIQFSKHNIRRPSPLPHISNAGQFQLTSSNEGLEEEWYTSPEGGCTILSNIYCLGVLFFELFNHFDSERTHTAAMSALRGRILPSAFLSEYPKEAAFCLRMLHPEPSSRPTIRKLRSEGEEMNWPAGQPESGEADKKILNTCKEILQSDVINGTKVVDCEELLSSLNQYDAESELLLHFLISLKKQKHVDAHKLTEEIRCMESDIKEVERRHGLRLSLASSSLKNNSSCGIEGVSLLKEASSAEILPPVYPVSKENELRLMKNMCLLENAYFSMRSTIKLPGTETATRPDKDVLRNSDNFCVAQKEMEKHTDTLGAFFDGLCKYARYQKFEVRGILRTADFNNPVNVICSLSFDRDGDYFAAAGISKKIKVFQFDAIFNNSVDIHYPVVEMVNKSRLSCVCWNSYVQNYLASTDYDGVVKVCVTCSLDFMPFELLLTSLAYIPCCIRELHSGICSFESALLIALPKWMHFQLWDANTGQEFSRLTEHEKRSWSVDFSIVCPTKFASGSDDCSLKLWSINEFSAHSSHMLAFGSADNSAYCYDLRFLRTPWCVLSGHRKSVSFVKFLDSETLVSASTDNTLKIWDLNRTCPVGRSTSACSLTLTGHTNEKNFVGLSVADGYITCGSETNEVYAYYKSFPMPVISHKFGSIDPVSGKETDDDYSQFVSSVCWRGKSDTLIAANTSGCIKVLQMV 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04492 1111 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 972 1005 - -
Vimu11g04492 1111 PANTHER PROTEIN SPA1-RELATED 2 890 1111 IPR044630 GO:0009640
Vimu11g04492 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 972 1005 IPR001680 GO:0005515
Vimu11g04492 1111 Gene3D - 887 1111 IPR015943 GO:0005515
Vimu11g04492 1111 Gene3D - 736 845 IPR015943 GO:0005515
Vimu11g04492 1111 Coils Coil 610 630 - -
Vimu11g04492 1111 Pfam WD domain, G-beta repeat 971 1003 IPR001680 GO:0005515
Vimu11g04492 1111 ProSitePatterns Trp-Asp (WD) repeats signature. 990 1004 IPR019775 -
Vimu11g04492 1111 ProSiteProfiles Trp-Asp (WD) repeats profile. 903 945 IPR001680 GO:0005515
Vimu11g04492 1111 SUPERFAMILY Protein kinase-like (PK-like) 456 535 IPR011009 -
Vimu11g04492 1111 SUPERFAMILY WD40 repeat-like 761 1109 IPR036322 GO:0005515
Vimu11g04492 1111 SMART WD40_4 965 1003 IPR001680 GO:0005515
Vimu11g04492 1111 SMART WD40_4 1070 1109 IPR001680 GO:0005515
Vimu11g04492 1111 SMART WD40_4 1014 1053 IPR001680 GO:0005515
Vimu11g04492 1111 SMART WD40_4 896 936 IPR001680 GO:0005515
Vimu11g04492 1111 SMART WD40_4 753 792 IPR001680 GO:0005515
Vimu11g04492 1111 SMART WD40_4 803 842 IPR001680 GO:0005515
Vimu11g04492 1111 Gene3D Transferase(Phosphotransferase) domain 1 270 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04492 Vimu-Chr11 65925377 65931835 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04492 K16240 - gmx:100776980 1484.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu7g02399 7 20579319 20588634 Vimu11g04492 11 65925377 65931835 PCT