Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04455 ATGCGAAGACAGTGTCACGGTTGCGGAGATGTTCATGGCCAATACTCAGACCTTTTAAGGCTGTTTGAATACGGGGGATACCCACCAGAAGCAAATTATTTATTTCTTGGAGATTATGTTGATCGTGGTAAGCAAAGCATAGAGACAATATGCTTACTCCTTGCATACAAGGTCAAATACAAGGAGAATTTCTTTCTTCTCAGGGGTAACCATGAGTGTGCCTCCATCAACCGAATATATGGTTTCTATGATGAGTGTAAGAGGAGATTTAATGTTCGCATCTGGAAGACATTTACTGAATGCTTTAATTGTCTACCTGTTGCTGCTCTGATAGATGAGAAGATTCTTTGCATGCATGGTGGACTATCACCTGATCTTAAACATTTGGATCAGATACGGAATCTTGCTCGTCCTATCGATGTGCCAGATCACGGTCTTCTCTGTGATCTTCTATGGGCTGATCCTGATAAAGATCTTGATGGGTGGGGAGAAAATGATCGAGGTGTGTCATTTACATTTGGGGCTGACAAGGTTGTTGAATTTCTTGAACAGCATGATCTTGATCTAATTTGCAGAGCTCACCAGGTAATGAAACCTATACTTTTGTCCATTTCTCTATAG 621 0.4106 MRRQCHGCGDVHGQYSDLLRLFEYGGYPPEANYLFLGDYVDRGKQSIETICLLLAYKVKYKENFFLLRGNHECASINRIYGFYDECKRRFNVRIWKTFTECFNCLPVAALIDEKILCMHGGLSPDLKHLDQIRNLARPIDVPDHGLLCDLLWADPDKDLDGWGENDRGVSFTFGADKVVEFLEQHDLDLICRAHQVMKPILLSISL 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04455 206 Pfam Calcineurin-like phosphoesterase 8 195 IPR004843 GO:0016787
Vimu11g04455 206 SUPERFAMILY Metallo-dependent phosphatases 8 198 IPR029052 -
Vimu11g04455 206 PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE 5 198 - -
Vimu11g04455 206 FunFam Serine/threonine-protein phosphatase 4 200 - -
Vimu11g04455 206 ProSitePatterns Serine/threonine specific protein phosphatases signature. 67 72 IPR006186 GO:0016787
Vimu11g04455 206 PRINTS Serine/threonine phosphatase family signature 33 60 IPR006186 GO:0016787
Vimu11g04455 206 PRINTS Serine/threonine phosphatase family signature 186 206 IPR006186 GO:0016787
Vimu11g04455 206 PRINTS Serine/threonine phosphatase family signature 129 156 IPR006186 GO:0016787
Vimu11g04455 206 PRINTS Serine/threonine phosphatase family signature 4 31 IPR006186 GO:0016787
Vimu11g04455 206 PRINTS Serine/threonine phosphatase family signature 100 126 IPR006186 GO:0016787
Vimu11g04455 206 PRINTS Serine/threonine phosphatase family signature 66 90 IPR006186 GO:0016787
Vimu11g04455 206 SMART pp2a_7 1 205 IPR006186 GO:0016787
Vimu11g04455 206 Gene3D - 1 200 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04455 Vimu-Chr11 65645599 65647255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04455 9 192 Calmodulin-binding Proteins AT5G63870 30.594 3.51e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04455 K06269 - gmx:100783178 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04455 11 65645599 65647255 Vimu11g04455 11 65645599 65647255 ECH