Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04454 ATGAAGTGCAGATCGGTGGCGTGCATATGGTCCGGCACGCCGTTCCCTCACCGCGTCACCGCCGTCGCCGCTTTGACGGAACCACCTACGCAAACCTTTTACACAGCTGGATCGGATGGCTCCATCATCTGGTGGACCATCTCCAGTTCCCCTTCCACACCGGAAGTTAAGGCGGTGGGCGTGCTGTGCGGTCACGGTGCACCGGTGACTGATCTCGCTGTATGTAGGCCAATTGCAGATGCAGGAAATGGTTATACTTCGAGTGCAAGTAAGTTCAGTGCATTGATAAGTGCGTGCTGTGATGGTTTTCTGTGTGTGTGGAGCAAGAACAGTGGCCATTGCCGGTGCCGGAGGAAATTGCCGCCTTGGGTTGGCACTCCTCGTTTAATTAGAACCTTGCCTTCGACACCGAGATATGTGTGTATAGCGTGTTCTTTAGAGGGGAATGAAGGACTAATTGATAGAGAAACTCAGCCTAGGAAGCCTCCTAAATGCACTGTTCTTATTGTGGACTCGTATTCGCTTTCCATTACTCAAACTGTGTTTCATGGAAGTCTATCCATTGGTTCAATTAAGTTTATGACATTGGTGTTGGGTGATGACGAGAAGAGAAACTCTGTGTTTGTGGCTGATTCGGCTGGGAGGCAGCAGATGGTTCCAATATCAGAGGATCGAGGGGAGAGCTTGGCGGGTTCACTTGGTGATAAAGGTCAATTGGAGACCTCTTTTTTCGATGAAGAATTGAGTAGTGTGGAGCAGATTGTTTCGGTTTTAACCTATGGGAATGTTGTTGCTTCAATATTGGAAGGTCGGTGTGTCTTCAGGTTACTGAATCATAGTGTGATTGGAGAAGTTTCTTTTGTGGATAGCTTATTCAGTTTGGATCAGGGTTCTATTCAAACACATGCTGTTGGTGGCATTTTTCTTGAGAATGATGATGTGGAGAATGTGTTCAACGGCAACGAATATGGAAACTCGATTACAGTACGATTTGCTGTGTGGAATAATGTAGGTTATGCAGTTATATATAATGTATTGTATCAGAACGATGTTTTCCAATGTGAACCTTTTTCTGAGATTCCCGGTACTCGTTATCAACCTGATATGAGATTATCTGTTTTTTTTCAACAAGTAAGTCAATATCTTGTATGCATCAAGTCAATTTGCTATAGTTATGAGGATCCTTTACTGTGGAGACCACTTGCCACAATGTGGTCATTGCATGATTTTAGTGATGAACCTGGTAGATTGTATCGTCAATGCAGAATGATTGGTGATGGTGTATCTTTCACCGGCTGGTTTGAGAAATTGACTCAGCTCACGGGACTCGATGGTCTTGAAACTACTACTTTTGGTGTGAGTCCAAGTTCTGATATTGTAGACAACAAACAAGCTGGTACTGGAACTAATGGTTATGCTTACAAGGGGAAGGTCGTTTCTTCCTCCATGATCATCTCCGAGAACCTCTTTACTCCTTATGCTGTTGTATACGGTTTTTTAAGTGGAGAAATAGAGGTTGTAAGGTTTGATTTGTTTCAAGGGATTTGCTTGGATGATGCAAGTTCCAATCCTGATGAAAAGCCAACTGCTTGCAAACAGTTTTTCTCAGGACATACAGGTGCTGTACTTTGTTTGGCAGCACATCAAATGATGGGTAGTGCCGAAAGCTGGAATTTTAAGCAGGTTTTGGTGTCTGGAAGTATGGATTGCACGATTCGAATATGGAATCTTGACACTGGCAGTCTTATCATGGTAATGCATCATCATGTGGCTCCTGTCCGTCAAATTATTCTTGCTCCATCTATAACTGTGCATCCATGGAGTAATTGTTTCCTTTCAGTTGGAGAGGATGCATGTGTTGCTCTTGTTTCTCTAGAGACTCTGCGAGTGGAGAGAATCTTTCCTGGACATATGAACTATCCTTCTAAAGTTTTATGGGATGGAGCAAGAGGTTATATTTCCTGTCTCTGTCAAACACATTACGGAACTTCTGATGCTACTGATGTATTATACATTTGGGATGTGAAGACAGGTTCACGTGAGCGAGTCCTACTTGGGACAGCTGCACATTCAATGTTTGATAATTTTTGTAAAAGCATCAGCAAGAATTCCGTATCTGGCACATTGCTGAATGGAAACACATCAGTCTCTTCCTTACTCCTTCCGATAGTTGATGATGCAAGGTTCTCTAACTCCCCCTTAAGTCGTTCAGACAACTTGCTTACTTCATCAAGGTCGTCACCAAATATTTCAAATATGACTGAGCTGAATTCTTCCAAAACAAATGCAGGTAAAGAAATTTCAGTGAAGCCACATTCATCCTCTCAGATTGGTCTTTTGAGTAGCAAGCTTCCTATCAAATGCGCTTGCCCTTTCCCAGGGATAGTGTCTCTGTGTTTTGATCTTTCATCCTTGATGTTCTTATTTCAAAAGAATGAGTCCGTGGAAAATGGTGGTGGCAAGCCAGTGAATATCAATTTGAAGCAGCAGGGAGTCCAGGAGCAAAATCCCAGCTACCATAATTCAGAAACTTTAGAGGGGCATGACTTGGTTAACCTATTTGAAGAATACTTACTTCGGTATAGCTTGTCATATCTACATTCTTGGAGTGTAGACACAGAGCTTGATAATTTGTTGATAACTGACATGAAGCTGATGAGACCAGAAAATTTCATAGTAGCCTCTGGTCTGCAGGGGGATAAAGGATCATTGACATTGACATTTCCTGCTCAGAGTGCTAATCTTGAGCTCTGGAAATCATCATCCGAGTTTTGTGCAATGAGATCGTTGACAATGGTGTCCCTTGCCCAACGTTTGATTAGCTTGTCTCACTCTGGTTCGGCAGCCAGCAGTGCTTTAGCAGCCTTTTATACTCGGAATTTCCTGGAAAATTTTCCAGATGTGAAGCCACCTTCATTGCAGCTCTTGGTGGCTTTTTGGCAAGATGAAAGTGAACATGTGCGTATGGCTGCACGCTCTATATTTCATTGTGCTGCCTCTCATGTTATTCCTCTACCTCTATGCAATTTGAAACCTACTGAGTCAAACAATATGAGTTTCCATACTGGAAGTAGAGACAGGCATAACCTAGGAAACAAGAGGGAAGAGAGTCTATCTCCTAAGGTAGAAAAACAAGGAGTTTCCCATGATGAGGAATCCAAGATACTTGCTTGGCTAGAATCATTTGAAGTGCAAGATTGGATTTCTTGTGTTGGTGGAACTAGTCAGGATGCAATGACATCTCACATTATTGTTGCTGGTGCACTGGCTATCTGGTATCCTAGTCTTGTAAAGCCAAGTCTTTCCAGGCTTGTTGTTCATCCATTAATGAAGTTGGCTATGGCTATGAATGAGAAGTATAGCTCCACTGCTGCTGAGCTCCTTGCAGAGGGCATGGAAAGTACATGGAAAGAATGCATTATCTCTGAGATTCCTCGTCTAATTGGGGATATTTTTTTCCAAGTAGAGTTGAGTGGCCCATCTTCCAAGTCAGTGAAAGAAATATCTGATGCATCTTTTTCTATTAAAAAGACATTGGTGGAGGTTCTTCTTCCAAGTTTGGCTATGGCTGATATAACAGGCTTTTTGGCTGTGATTGAAAGCCAAATTTGGTCTACTGCATCTGATTCACCTGTCCACATGGTGTCCTTGTTGACTCTCATAAGGATCATGCGTGGTTCTCCAAAGAATTTGGCTCAATACCTTGACAAGGTTGATTTTTCACTTCACCACATGTTTTTGGTTAGTGCGTCAGATCTGCAGGTGGTCAACTTCATTTTACAGACTATAGATCCTAGCAACTCAGTCATGCGGAAGGCATGCTTCCAAAGTTCAATGACAACTTTCAAGGAACTTGTACGTGTATATCCCATGGTGGCTGTCAATGATTCATGGACCAAACTAGCAGTTGGAGATGTGATTAGAGAAGTTAACAATGCAAACATCAGGGTTTATGATATGCAAAGTGTGACAATGATAAAGGTTTTAGATGCAAGTGGGCCTCCTGGACTTCCAACCCTACTCCCAGCATCATTATCAGGAACAATGTTGACCACTGCTATTTCAGCACTGAGCTTTTCACCAGATGGAGAGGATAATGCGAGGGATTCAAATCACGGGGACAGTCCAAAACAATTGCTTCATAATTTGGATCTCTCCTATAGACTAGAATGGGTTGAGGGGCGGAAAGTTCTTCTTACAAGACACGGTCATGAATTGGGCACTTTTCAGTTATAA 4236 0.4273 MKCRSVACIWSGTPFPHRVTAVAALTEPPTQTFYTAGSDGSIIWWTISSSPSTPEVKAVGVLCGHGAPVTDLAVCRPIADAGNGYTSSASKFSALISACCDGFLCVWSKNSGHCRCRRKLPPWVGTPRLIRTLPSTPRYVCIACSLEGNEGLIDRETQPRKPPKCTVLIVDSYSLSITQTVFHGSLSIGSIKFMTLVLGDDEKRNSVFVADSAGRQQMVPISEDRGESLAGSLGDKGQLETSFFDEELSSVEQIVSVLTYGNVVASILEGRCVFRLLNHSVIGEVSFVDSLFSLDQGSIQTHAVGGIFLENDDVENVFNGNEYGNSITVRFAVWNNVGYAVIYNVLYQNDVFQCEPFSEIPGTRYQPDMRLSVFFQQVSQYLVCIKSICYSYEDPLLWRPLATMWSLHDFSDEPGRLYRQCRMIGDGVSFTGWFEKLTQLTGLDGLETTTFGVSPSSDIVDNKQAGTGTNGYAYKGKVVSSSMIISENLFTPYAVVYGFLSGEIEVVRFDLFQGICLDDASSNPDEKPTACKQFFSGHTGAVLCLAAHQMMGSAESWNFKQVLVSGSMDCTIRIWNLDTGSLIMVMHHHVAPVRQIILAPSITVHPWSNCFLSVGEDACVALVSLETLRVERIFPGHMNYPSKVLWDGARGYISCLCQTHYGTSDATDVLYIWDVKTGSRERVLLGTAAHSMFDNFCKSISKNSVSGTLLNGNTSVSSLLLPIVDDARFSNSPLSRSDNLLTSSRSSPNISNMTELNSSKTNAGKEISVKPHSSSQIGLLSSKLPIKCACPFPGIVSLCFDLSSLMFLFQKNESVENGGGKPVNINLKQQGVQEQNPSYHNSETLEGHDLVNLFEEYLLRYSLSYLHSWSVDTELDNLLITDMKLMRPENFIVASGLQGDKGSLTLTFPAQSANLELWKSSSEFCAMRSLTMVSLAQRLISLSHSGSAASSALAAFYTRNFLENFPDVKPPSLQLLVAFWQDESEHVRMAARSIFHCAASHVIPLPLCNLKPTESNNMSFHTGSRDRHNLGNKREESLSPKVEKQGVSHDEESKILAWLESFEVQDWISCVGGTSQDAMTSHIIVAGALAIWYPSLVKPSLSRLVVHPLMKLAMAMNEKYSSTAAELLAEGMESTWKECIISEIPRLIGDIFFQVELSGPSSKSVKEISDASFSIKKTLVEVLLPSLAMADITGFLAVIESQIWSTASDSPVHMVSLLTLIRIMRGSPKNLAQYLDKVDFSLHHMFLVSASDLQVVNFILQTIDPSNSVMRKACFQSSMTTFKELVRVYPMVAVNDSWTKLAVGDVIREVNNANIRVYDMQSVTMIKVLDASGPPGLPTLLPASLSGTMLTTAISALSFSPDGEDNARDSNHGDSPKQLLHNLDLSYRLEWVEGRKVLLTRHGHELGTFQL 1411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04454 1411 Gene3D - 513 780 IPR015943 GO:0005515
Vimu11g04454 1411 ProSitePatterns Trp-Asp (WD) repeats signature. 563 577 IPR019775 -
Vimu11g04454 1411 SUPERFAMILY ARM repeat 933 1292 IPR016024 -
Vimu11g04454 1411 MobiDBLite consensus disorder prediction 738 767 - -
Vimu11g04454 1411 Gene3D - 4 241 IPR015943 GO:0005515
Vimu11g04454 1411 MobiDBLite consensus disorder prediction 1026 1045 - -
Vimu11g04454 1411 SMART WD40_4 55 108 IPR001680 GO:0005515
Vimu11g04454 1411 SMART WD40_4 627 674 IPR001680 GO:0005515
Vimu11g04454 1411 SMART WD40_4 528 576 IPR001680 GO:0005515
Vimu11g04454 1411 SMART WD40_4 579 624 IPR001680 GO:0005515
Vimu11g04454 1411 SMART WD40_4 5 46 IPR001680 GO:0005515
Vimu11g04454 1411 PANTHER RABCONNECTIN-3B, ISOFORM A 3 1375 - -
Vimu11g04454 1411 ProSiteProfiles Trp-Asp (WD) repeats profile. 563 585 IPR001680 GO:0005515
Vimu11g04454 1411 MobiDBLite consensus disorder prediction 1018 1045 - -
Vimu11g04454 1411 Pfam WD domain, G-beta repeat 531 576 IPR001680 GO:0005515
Vimu11g04454 1411 SUPERFAMILY WD40 repeat-like 17 686 IPR036322 GO:0005515
Vimu11g04454 1411 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 526 587 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04454 K24738 - gmx:100818675 2306.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04454 11 65629295 65641909 Vimu11g04454 11 65629295 65641909 ECH