Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04448 ATGGCGATAACCTCCAATGGAGAAAACGCTAACAAATTTGACCATCTCCCATCGCACACACTTATAAATTTGAACAGACGTCATGCCCCTTCGACCTCTACTAGAGCCACCTTAAGAGTGTTTGATTGCATTGCACTGTCGCTTTCCCTCGTAACCGATTTCTGTTTCACAGCTCGCAGACTCACAATGGCCGCGATATCAAACTCACTGTCACTCAAGCACGGTTTCTCTCTGGCGCGTCCGCAACGTCCTTTTCTCACTTCAGCTCCTCCTTCTTCCACTTCAATCAAATTCAGAAGATGCTACGCCGCGTTCGCCAATGAGAATCGCGAGTACGTGATCGTTGGCGGTGGAAATTCCGCGGGATATGCTGCACGCACTTTCGTCGAGCACGGCATGGCGGATGGACGCCTCTGTATTGTGACCAAAGAGGGTTTTCATACGTGTGTTGGATCCGGTGGAGAGAGGCAGACTCCAGAGTGGTATAAAGAGAACGGGATAGAGATGTTGTATGAAGATCCAGTAAAGGATATTGATATTGAAAATCAAACTTTGACAACAAATTCTGGAAAACTTCTGAAGTATGGTTCGCTTATTATTGCAACAGGATGTACGGCATCAAGGTTTCCAGAGAAAATTGGGGGAAACCTACCTAGTGTTCACTATATCCGGAATGTTGCAGATGCTGATGCACTGATTTTATCATTGGAAAAATCAAAAAAGGTTGTAGTTGTTGGAGGTGGTTATATAGGAATGGAGGTTGCTGCTGCTGCTGTTGGTTGGAATCTTGATACCACGATCATATTTCCGGAAGATCAACTTTTGCAAAGACTGTTTACTCCTTCTCTTTCCCGGAGATATGAAGAACTCTACCAAAAAAATGGAGTCAAAATCTTAAAGGGTGCCTCCATAAAAAAGTTGGAAGCTGGTTCTAATGGACATGTAGCTGGAGTGAAACTTGGAGATGGATCTATGGTGGAAGCAGATACAGTTATCATAGGCATCGGAGCTAAACCTGCTGTGAGCTCCTTTGAGAGGGTGGGCCTAAATACAGATGTTGGTGGTATACAGGTTGATGGTTTGTTCCGGACAAGCATTCCTGGAATCTTTGCTGTTGGTGATGTAGCAGCTTTCCCTTTAAAGATTTATGACCGTATCTCTCGAGTGGAACATGTAGATCATGCCCGTCGCTCTGCACAGCACTGTGTGAAAGCATTACTCAGCGCACAAACTCAAACGTATGACTATCTTCCATACTTCTACTCGAGGATTTTTGAATACGAAGGAAGCCCTAGAAAAGTATGGTGGCAGTTCTTTGGAGACAATGTCGGAGAAACAGTTGAAGTTGGAAATTTTGATCCTAAAATAGCTACCTTCTGGATTGAATCTGGTAAGCTGAAAGGAGTTCTTCTTGAAAGTGGGAGCCCCGAGGAATTTCAACTCCTGCCTAAACTCGCCAGAAATCAACCTCTGATTGACAAAGCAAAACTTCAAAACGCAACTACAGTGGAGGAGGCTCTAGAGATTGCTCGAGCATCCTTGCAAGGCGAAGCCGCTGTCTAA 1563 0.4479 MAITSNGENANKFDHLPSHTLINLNRRHAPSTSTRATLRVFDCIALSLSLVTDFCFTARRLTMAAISNSLSLKHGFSLARPQRPFLTSAPPSSTSIKFRRCYAAFANENREYVIVGGGNSAGYAARTFVEHGMADGRLCIVTKEGFHTCVGSGGERQTPEWYKENGIEMLYEDPVKDIDIENQTLTTNSGKLLKYGSLIIATGCTASRFPEKIGGNLPSVHYIRNVADADALILSLEKSKKVVVVGGGYIGMEVAAAAVGWNLDTTIIFPEDQLLQRLFTPSLSRRYEELYQKNGVKILKGASIKKLEAGSNGHVAGVKLGDGSMVEADTVIIGIGAKPAVSSFERVGLNTDVGGIQVDGLFRTSIPGIFAVGDVAAFPLKIYDRISRVEHVDHARRSAQHCVKALLSAQTQTYDYLPYFYSRIFEYEGSPRKVWWQFFGDNVGETVEVGNFDPKIATFWIESGKLKGVLLESGSPEEFQLLPKLARNQPLIDKAKLQNATTVEEALEIARASLQGEAAV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04448 520 Gene3D - 144 402 IPR036188 -
Vimu11g04448 520 PRINTS FAD-dependent pyridine nucleotide reductase signature 328 344 - -
Vimu11g04448 520 PRINTS FAD-dependent pyridine nucleotide reductase signature 354 376 - -
Vimu11g04448 520 PRINTS FAD-dependent pyridine nucleotide reductase signature 241 259 - -
Vimu11g04448 520 PRINTS FAD-dependent pyridine nucleotide reductase signature 113 132 - -
Vimu11g04448 520 PRINTS FAD-dependent pyridine nucleotide reductase signature 195 213 - -
Vimu11g04448 520 Pfam Pyridine nucleotide-disulphide oxidoreductase 112 399 IPR023753 GO:0016491
Vimu11g04448 520 Gene3D - 209 336 IPR036188 -
Vimu11g04448 520 PRINTS Pyridine nucleotide disulphide reductase class-II signature 112 134 - -
Vimu11g04448 520 PRINTS Pyridine nucleotide disulphide reductase class-II signature 364 382 - -
Vimu11g04448 520 PRINTS Pyridine nucleotide disulphide reductase class-II signature 237 261 - -
Vimu11g04448 520 SUPERFAMILY FAD/NAD(P)-binding domain 106 406 IPR036188 -
Vimu11g04448 520 Gene3D - 419 505 IPR016156 GO:0016491|GO:0050660
Vimu11g04448 520 PANTHER APOPTOSIS-INDUCING FACTOR 1 110 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04448 Vimu-Chr11 65572935 65584483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04448 192 380 Acyl Lipid Metabolism Gene Families AT1G48030 27.941 1.13e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04448 K08232 - gmx:100819919 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04448 11 65572935 65584483 Vimu11g04448 11 65572935 65584483 ECH