Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04443 ATGAATTATTTGACATGTGAAGTTTGGCAGGTCATGGATGCTTTGTTGTTATTATGTGTTCTTCTGGTTGCTTTGCCAAACGTCGCTGTAGTGGAGAGCCGGAAAGCTCCAGTTTTGGACTACTTTGAGTATTGTGCTATGAGCTGCAGAGCTTATAGTGCCTCATTGGAAGAATTTGGGGGTGTTGGTGATGGAACAACTTTGAACACCGGAGCCTTTCAGGCAGCCATAGATCATCTGAGTCAGTATGCATCAAGTGGAGGGTCTCAACTTTATGTTCCCCCAGGAAGATGGTTAACTGGCAGCTTCAATCTCACCAGCCATTTCACTTTATTCCTACACAAGGATGCCGTGATTCTTGGCTCTCAGGATGAAAATGACTGGCCAGTGATTGATCCCTTGCCATCTTACGGTAGAGGGAGGGACACCCAAGGTGGAAGGTTTAGCAGCCTAATTTTTGGGACCAACCTCACTGATGTAATCATAACTGGGAACAATGGCACATTGGATGGACAAGGAGATCTCTGGTGGCAAAAATTCCGCAAGGGGGAGCTCAATTATACCAGGCCTTACCTGATTGAAATCATGTACTCAGATAATGTTCAGATATCCAATCTCACTCTGGTGAACTCTCCATCGTGGAATGTTCATCCTGTATACAGCAGCAACGTTGTTGTTCAAGGGGTCACAATTCTTGCTCCTGTGACATCTCCAAATACAGATGGAATCAACCCTGACTCTTGTACAAACACAAGAATTGAAGACTGTTATATTGTGTCCGGGGATGACTGTGTGGCTGTGAAGAGTGGTTGGGATGAGTATGGTATAGCTTATGGAATGCCAACAAAGCAGCTTGTAATCAGAAGACTAACTTGTATTTCTCCATTCAGTGCTGTGATTGCTTTAGGGAGTGAGATGTCTGGTGGGATCCAAGATGTGAGGGCTGAGGACATTGTAGCCATCAATTCAGAATCAGGGGTTAGAATCAAAACTGCTGTGGGAAGAGGAGGGTATGTTAAGGACATATATGTTAGAAGAATGACCATGAAAACCATGAAATGGGCATTTTGGATGACAGGAAATTACGGGTCACATGCTGATGACAAGTATGATCCTAATGCACTTCCTGTGATTCAGAACATAAACTATCGTGATATGGTTGCTGAGAATGTCACTATGGCTGCGAGGTTGGAGGGAATCTCTGGTGACCCTTTTACTGGAATCTGCATATCTAATGTAACCATTCAAATGGCAAAGAAGGCTAAAAAAGTTCCATGGACTTGCACTGATATTGATGGGATTTCAAGCGATGTCACTCCTGCACCATGTAATCTGTTGCCAGAACAAGGAGAAGAGAAGATTGGAGCATGTACCTTCCCAGAGGAAAGTTTGCCGATAGAAGATATCCAGGTTCAAACGTGCACTTACAGTAGGAATTTATAA 1443 0.438 MNYLTCEVWQVMDALLLLCVLLVALPNVAVVESRKAPVLDYFEYCAMSCRAYSASLEEFGGVGDGTTLNTGAFQAAIDHLSQYASSGGSQLYVPPGRWLTGSFNLTSHFTLFLHKDAVILGSQDENDWPVIDPLPSYGRGRDTQGGRFSSLIFGTNLTDVIITGNNGTLDGQGDLWWQKFRKGELNYTRPYLIEIMYSDNVQISNLTLVNSPSWNVHPVYSSNVVVQGVTILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQLVIRRLTCISPFSAVIALGSEMSGGIQDVRAEDIVAINSESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHADDKYDPNALPVIQNINYRDMVAENVTMAARLEGISGDPFTGICISNVTIQMAKKAKKVPWTCTDIDGISSDVTPAPCNLLPEQGEEKIGACTFPEESLPIEDIQVQTCTYSRNL 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04443 480 FunFam Glycoside hydrolase family 28 protein 40 437 - -
Vimu11g04443 480 PANTHER PECTIN LYASE-RELATED 22 468 - -
Vimu11g04443 480 Gene3D - 44 438 IPR012334 -
Vimu11g04443 480 SUPERFAMILY Pectin lyase-like 46 448 IPR011050 -
Vimu11g04443 480 Pfam Glycosyl hydrolases family 28 149 423 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04443 Vimu-Chr11 65536274 65538731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04443 2 476 Glycoside Hydrolase AT3G61490 66.460 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04443 - - gmx:100785841 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04443 11 65536274 65538731 Vimu11g04443 11 65536274 65538731 ECH