Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04432 ATGGGATACGGTGAAAAAGGAGGAAAACCTCCGTTCAAAAAGTTCAAGGGCTCTTCTAAATCTCAGGATGATCCTCGAAAAGGATTTGTTGAAGATGACGATGTATATGGCGGTGATGATGCATACGACGATGACGAAGGGAAAACCAAGGATTTTAGCAAATTAGAGCTGAAACAGGATCACACCAATCGCCCTCTGTGGGCTTGCGGCAATGGCCGCATATTCCTCGAGACTTTCTCGCCTTTATACAAGCAAGCTTATGATTTTCTCATTGCCATCGCTGAGCCTGTTTGCAGGTGTTTGCTATGTGGGTTTTTGATCGATAATAGGCCGGAGTCTATGCACGAGTACAACCTTACTCCACACTCGCTGTATGCCGCTGTTTCTGTTGGTCTGGAAACTGAAACAGTTATAAGTGTTTTGAACAAGTTATCCAAGACCAAGCTTCCCAAAGAGATGATTAAATTTATACATGATTCTACTGCGAATTATGGCAAGGTGAAACTTGTGCTCAAGAAGAATCGCTACTTTATTGAATCTCCATTTCCAGAGGTATTGAAGACATTGCTCAAGGATGACACTATATCTCGAGCAAGGATTATTTCAGAGAATGTAAATGGAGATGGATTTACAATAAGCAAAGCAGCAGGTGAAATTGAAGGTACTCATGATGAATTGCTAAACGAAGCAGAAGTGGCAGCGGCTGCAGAAGAGAAAGAAACACATTCATTTGAAATTGATCCTTCTCAGGTTGAAAATGTAAAGCAACGTTGCTTGCCAAATGCATTAAATTATCCTATGTTGGAGGAGTATGACTTCAGAAACGATACGGTGAACCCAGACCTTGACATGGAACTAAAGCCTCAAGCACAACCACGGCCTTATCAAGAGAAGAGTCTCAGTAAAATGTTTGGAAATGGTAAGAAGGTTGACAACATTTGCAAGGACACATGTCACGAGCTAGCAAGGTCTGGTATAATAGTTCTACCTTGTGGAGCTGGAAAGTCCCTAGTTGGTGTTTCTGCAGCTTGCCGTATAAAAAAGAGCTGCCTTTGTTTGGCAACGAATGCTGTTTCCGTAGATCAATGGGCTTTTCAATTTAAACTTTGGTCAACTATCCGAGAAGAAAACATATGTCGATTCACATCTGATAGCAAAGAGAGATTCCGTGGTAATGCTGGAGTTGTCGTGACAACATATAATATGGTTGCTTTTGGTGGTAAACGATCTGAAGAATCTGAAAAGATCATTGAAGAAATACGAAACAGAGAATGGGGATTGCTCCTCATGGATGAGGTGCATGTGGTTCCTGCCCATATGTTTCGAAAAGTCATTAGTATCACTAAATCTCACTGTAAACTTGGGCTCACAGCTACACTTGTCAGAGAGGACGAAAGGATTACAGATCTGAACTTCCTGATTGGTCCCAAGCTGTATGAGGCAAATTGGTTAGATCTAGTAAAAGGTGGATTCATCGCAAATGTACAGTGTGCTGAAGTATGGTGTCCGATGACAAAAGAGTTTTTTGCCGAGTATTTGAAGAAAGAGAACTCCAAGAAGAGGCAGGCACTTTATGTGATGAATCCTAATAAGTTCCGAGCGTGTGAGTTTCTCATAAATTACCATGAAAGGGCACGTGGTGATAAAATTATAGTCTTTGCTGATAATCTGTTTGCTCTCACCGAGTATGCCATGAAGCTCCGCAAACCAATGATCTATGGTGCTACAAGCCATGTAGAGAGGACAAAAATTTTACAAGCATTCAAAACTAGCAAAGATGTAAATACCATATTTCTTTCGAAGGTGGGTGATAACTCTATCGATATTCCTGAAGCAAACGTGATAATTCAGATCTCTTCACATGCTGGTTCAAGGAGACAAGAAGCCCAGCGTCTTGGTCGTATTCTTAGGGCAAAGGGAAAGCTCCAGGATAGGATGGCTGGGGGTAAGGAGGAGTATAATGCCTTTTTTTATTCCCTTGTCTCAACTGATACCCAGGAGATGTATTACTCAACTAAGAGGCAACAATTTTTAATTGATCAGGGTTACAGTTTTAAGGTAATTACAAGCTTGCCTCCTGCTGATGAAGGACCTAGTTTGAGCTATTATCATATTGAGGATCAATTGGCGCTTCTTGGAAAGGTTTTGAGTGCTGGTGATGATGCAGTTGGATTAGAACAACTGGAAGAAGATTCAGACGAAATAGCTCTTCACAATGCTCGCCGTTCTCATGGATCCATGAGTGCAATGTCAGGCGCAAAAGGGATGGTTTATATGGAATACAGTACTGGGCGTAACAAAGGCCAAGGACAGATCAAGAGCAAGCCAAAAGATCCAGCCAAGAGGCACTTCTTATTTAAAAGAAGATTTGGCGCACCCTAA 2382 0.4165 MGYGEKGGKPPFKKFKGSSKSQDDPRKGFVEDDDVYGGDDAYDDDEGKTKDFSKLELKQDHTNRPLWACGNGRIFLETFSPLYKQAYDFLIAIAEPVCRCLLCGFLIDNRPESMHEYNLTPHSLYAAVSVGLETETVISVLNKLSKTKLPKEMIKFIHDSTANYGKVKLVLKKNRYFIESPFPEVLKTLLKDDTISRARIISENVNGDGFTISKAAGEIEGTHDELLNEAEVAAAAEEKETHSFEIDPSQVENVKQRCLPNALNYPMLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGKKVDNICKDTCHELARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREENICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSKKRQALYVMNPNKFRACEFLINYHERARGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKTSKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADEGPSLSYYHIEDQLALLGKVLSAGDDAVGLEQLEEDSDEIALHNARRSHGSMSAMSGAKGMVYMEYSTGRNKGQGQIKSKPKDPAKRHFLFKRRFGAP 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04432 793 NCBIfam DNA repair helicase rad25 51 788 IPR001161 GO:0003678|GO:0006289|GO:0006367
Vimu11g04432 793 SMART helicmild6 561 639 IPR001650 -
Vimu11g04432 793 PANTHER RAD25/XP-B DNA REPAIR HELICASE 55 761 - -
Vimu11g04432 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 737 IPR027417 -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 614 639 - -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 424 444 - -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 528 543 - -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 64 84 - -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 490 512 - -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 595 613 - -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 651 674 - -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 742 761 - -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 317 339 - -
Vimu11g04432 793 PRINTS Xeroderma pigmentosum group B protein signature 548 570 - -
Vimu11g04432 793 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 249 480 IPR027417 -
Vimu11g04432 793 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 533 699 IPR001650 -
Vimu11g04432 793 SMART ultradead3 288 482 IPR014001 -
Vimu11g04432 793 MobiDBLite consensus disorder prediction 1 44 - -
Vimu11g04432 793 Gene3D - 487 727 IPR027417 -
Vimu11g04432 793 Gene3D - 282 486 IPR027417 -
Vimu11g04432 793 FunFam Probable DNA repair helicase RAD25 282 486 - -
Vimu11g04432 793 MobiDBLite consensus disorder prediction 9 34 - -
Vimu11g04432 793 CDD SF2_C_XPB 497 661 - -
Vimu11g04432 793 CDD DEXHc_XPB 284 466 - -
Vimu11g04432 793 Pfam Helicase conserved C-terminal domain 66 200 IPR032830 -
Vimu11g04432 793 Pfam Type III restriction enzyme, res subunit 291 460 IPR006935 GO:0003677|GO:0005524|GO:0016787
Vimu11g04432 793 FunFam Putative DNA repair helicase rad25 487 729 - -
Vimu11g04432 793 Pfam ERCC3/RAD25/XPB C-terminal helicase 486 734 IPR032438 -
Vimu11g04432 793 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 316 478 IPR014001 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04432 K10843 - gmx:100789550 1387.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04432 11 65417919 65426535 Vimu11g04432 11 65417919 65426535 ECH