Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04425 ATGCCACCTTTTGCAGGTTCTGAACCAGCTGGCTTCCCCAAGCCTGATTCCAACATAGTTTCCATCGACGTCGGAGGCCAACTCTTCCAAACCACCAAACAGACACTAACCTCGGCTGGTCCCAAAACCTTCTTCTCCAGAATTGCGGAGTCTTCAGGAATCTACGCGCCCTTCATAGACAGAGACCCGGAAATCTTCTCGCTCCTTCTCTCTCTCCTCCGCACCGGAAACCTTCCCTCAAAGGCCAAAGCTTTCGATCTCCAAGACCTAATTATCGAGTCCAAATTCTACGGCATCGAAAGCCTCCTCATAAATTCCCTCTCTAACCCTTCTCAATTGGAACCCTTCAACCTCCAAAAGTCCCTCCTATTGCCCCTCAACGGCCGCGACTCCCCCTCCGCCCTCGCCGCCGACGCAGCCTGCGGTGCCCTCCACGTCGCGCACGGCAGCAAGATAACCTCCTTCGACTGGTCGCTCCGCCGCAAGGCCACCGTCCTCACCCACTTCACAGCCGTCGACTCCCTCCTGGCGCTCTCGCCAACACTGGTTGCCGCCGGCGCCAACGACTTCTCCGGCCTCCAGATCCTGGACCTCGAGAACGGCCGCGTCAAGGAAACCCTAAACTGGGAAAACGTCACCAAATCCGGGTCCACCGTCCAAGCCATCGGATCCTCCTCGGAGAACATGTTCGTCAGCTTCGAATCCTCGCGCCGAAACTCCAATTCCATAATGGTTTACGATTTGCATTCTCTAACCCCGGTCACCGAGATCGGTCACAATGAAATCTTCGGCGCAGACATCGATTCGGCAATTCCCGCGACGAAGTTGCAGTGGGTTGAGGGTTACAATCTGTTGATGGCCTCTGGGTCCCACAGTGGTCCCTCCGGCGTTTCCGGTAACATACGGTTGTGGGACGTTCGATCCGGAAACGTTGTGTGGGAAATTTCTGAGAAGGTGGATTGTTTTGCTGACGTGGCGGTTTGCGATCCGTTGTCGGTAATTTTTAAGGTTGGGGTGAATTCGGGGGAAGCTTCTTACGTGGACATGCGGAATTTGAGCGGCGAGAGCGCGTGGGTTTGTCTTGGGGATAAAAGAAAGGTTACGAACAGTGGGAAAAAGGAAGGGATTGGGTCGAAAATCGAAACGCAGGGGAATCAAGTGTTTTGCACCAAGGGTGGTGACGTGGAGCTCTGGTCTGAGGTTATCATGGGTGGTGGCAATGGTGGTCGGATATTCAAGAAGAACTTAATGGGTAGAATGAGGGACATGGGTGGTGCAAAGATTACAAATTTGGCCTTTGGAGGAAGCACAATGTTCTTGACCAGAAAGGATCAGCAATGTGTTGAGGTTTGGCAGAGTTCTTCCAGGGAATTTTGA 1377 0.5352 MPPFAGSEPAGFPKPDSNIVSIDVGGQLFQTTKQTLTSAGPKTFFSRIAESSGIYAPFIDRDPEIFSLLLSLLRTGNLPSKAKAFDLQDLIIESKFYGIESLLINSLSNPSQLEPFNLQKSLLLPLNGRDSPSALAADAACGALHVAHGSKITSFDWSLRRKATVLTHFTAVDSLLALSPTLVAAGANDFSGLQILDLENGRVKETLNWENVTKSGSTVQAIGSSSENMFVSFESSRRNSNSIMVYDLHSLTPVTEIGHNEIFGADIDSAIPATKLQWVEGYNLLMASGSHSGPSGVSGNIRLWDVRSGNVVWEISEKVDCFADVAVCDPLSVIFKVGVNSGEASYVDMRNLSGESAWVCLGDKRKVTNSGKKEGIGSKIETQGNQVFCTKGGDVELWSEVIMGGGNGGRIFKKNLMGRMRDMGGAKITNLAFGGSTMFLTRKDQQCVEVWQSSSREF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04425 458 Pfam BTB/POZ domain 20 106 IPR003131 GO:0051260
Vimu11g04425 458 SUPERFAMILY WD40 repeat-like 147 352 IPR036322 GO:0005515
Vimu11g04425 458 Gene3D Potassium Channel Kv1.1; Chain A 13 110 IPR011333 -
Vimu11g04425 458 PANTHER BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER 14 455 IPR045068 -
Vimu11g04425 458 CDD BTB_POZ_KCTD-like 20 97 - -
Vimu11g04425 458 SMART BTB_4 18 114 IPR000210 GO:0005515
Vimu11g04425 458 SUPERFAMILY POZ domain 17 104 IPR011333 -
Vimu11g04425 458 Gene3D - 138 458 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04425 Vimu-Chr11 65351279 65352655 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04425 - - gmx:100792189 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04425 11 65351279 65352655 Vimu11g04425 11 65351279 65352655 ECH