Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04416 ATGGCGTTATCATTTCTTCGTGTTTCGCACTTGGTTTCTCCAACTCCTACAGCTGCAACTGCAACTACTACATCCACTGTAGTGAAGTTCCAACACTTTCGTAGACCTTCTGACTTCACACTCTTCTTTCGCTCTTCAATTTTATGTCCATTGGTTAGGGCCATTGGGCCTGATGGCAGGTTCTACCCAAGCCCAGGTGACGACGACCCACCGGAGGCTGCCGAGGACTCCTCCCATGGCTTCTCCACCTTCCAACAAATTCAGCAGCAAGCGGAACGCGCGCGCCAGATCGAAGAGGAAGACTACAAGAACAACCAGGCCACGTACCTCGCCGCCATCGCCGACGTCGAAGACGCCCCCGATAACGTCGACTTCGACACCTCTGGCGACGACCTCTTCGGCGATATCGACAAAGCCATCGCGCTCAAGCGTAAGGAGTTCGTCTCCCAAGGCCTTCTCGAGCCGAATCCCCCCAAACAAGACCAGCTGGCCGCTGCAGCCGTCGTGGATGAACTTCAGGCAGATGAGCTCGGCGATCTGGAGGAAATTGAACGGCTCCAGGGACTCACCGGTAATGGTAATGGTAACGGAAGCTTGAGTGAATCTCCGTTTGAATTGGATTTTGACAGTTACGGGAAAAGCAAGGTTAGAATTGTAGACGGAAAGTTCAAGATGAGTTTGGCTGAGCTTTTAGATGAGAGTAAGGTCGTGCCGGTGTCGGTTTCCGGTGATTTAGAAGTCGAAATCACCGGAATTCAGCACGATTCGCGGATTGTTAATTCCGGTGATTTGTTTGTGTGTTGCGTTGGGCGTAAAACCGACGGACATTTGTTTCTTTCCGAGGCTGATAAGAGAGGTGCGGTTGCGGTTGTGGCTAGTAAAGAGGTTGATATTGAGGATACTTTGGGGTGTAAGGCTTTGGTTATTGTGGAAGATACTAATGCTGTTCTTCCTGCTCTGGCTGCGTCGTTTTATAAACATCCTTCCACTAAAATGGCCGTGATTGGGATAACTGGGACTTATGGAAAAACGACCGCCACTTGTTTGATTAAAAGTTTGTATGAATCCATGGGACTACGCACTGGGATGTTGAACTCGGTTGCCTCTTTTGTCCACGGGGATAATAAGTTGGAGTTGGGTAGCGCGGCGTTGGATGCTGTTTTGGTTCAGAACTTGATGGCGAAGATGATACACAACGGGACTGAGGCGGTGGTCATGGAGGCAGGTTCTCATGGCCTGGAGGAGGGGAAGTATGATGAGGTTGATTTTGATATCGCTGTTTTCACAAACTTGAGTCAGGACAAGGAGGGCGACAGAAATGCGCAGGCTAAGTTGTTCTCGAGAATGGTCGATCCTGAGAGGCATAGGAAGGTTGTTAACATTGATGATCCGAACGCGCCATTTTTTGTGTCGCAGGGGAGCCAGGAGGTTCCTGTTGTGACGTTTGCGATGGAGAATAAGGATGCAGATGTTCATCCATTGAAGTTTGAACTTTCTCTGTTTGAGACTCAGGTGTTGGTTAATACTCCCACAGGGATACTGGAGATTTCTTCAGGTTTGCTTGGGAAGCATAATATTTACAACATTCTTGCGGCTGTAGCGGTTGGGATTGCTGTTGGGGCGCCCTTAGAGGACATTGTTAGAGGAATTGAAGAGGTTGATGCGGTTCCTGGGAGGTGTGAATTGATTGATGAGGAACAGGCATTTGGGGTGATAGTGGACCATGCCAGTACCCCTGATTCACTGTCTAGATTGCTTGATTCTGTAAGAGAGCTAGGACCTCGCAGGATCATAACTGTCATTGGATGCTGTGGTGAGGGTGACAGGGGTAAGAGACCTGCGATGACCAAGATAGCAACAGATAAAAGTGAAGTGACCATGCTCACATCTGACAATCCCAAAAATGAAGACCCTTTGGATATATTGGATGATATGTTATCTGGGGTAGGATGGTCAATGCAAGACTACCTCAAATATGGAGAAAATGACTATTATCCACCTCTTCCAAATGGTCATAGACTTTTTCTCCATGACATTAGGAGGGTAGCTGTGCGAGCTGCGGTTGCAATGGGAGAGGAGGGCGATGTGGTTGTGGTAACTGGCAAAGGCCATGAAGCATATCAAATAGAAGGTGATAAGAAGGAGTTTTTTGACGATCGAGAAGAGTGCCGAGAGGCATTGCAATATGTTGATGAGCTTCACCAAGCTGGAATAGATACAAGTGAATTTCCATGGAGAAAAGGGCAAAAAGCTGGAAAGCGCAAGCCCCAAATAAATAGCCTTCAAATTCCACGGTGCGCTTAG 2304 0.4831 MALSFLRVSHLVSPTPTAATATTTSTVVKFQHFRRPSDFTLFFRSSILCPLVRAIGPDGRFYPSPGDDDPPEAAEDSSHGFSTFQQIQQQAERARQIEEEDYKNNQATYLAAIADVEDAPDNVDFDTSGDDLFGDIDKAIALKRKEFVSQGLLEPNPPKQDQLAAAAVVDELQADELGDLEEIERLQGLTGNGNGNGSLSESPFELDFDSYGKSKVRIVDGKFKMSLAELLDESKVVPVSVSGDLEVEITGIQHDSRIVNSGDLFVCCVGRKTDGHLFLSEADKRGAVAVVASKEVDIEDTLGCKALVIVEDTNAVLPALAASFYKHPSTKMAVIGITGTYGKTTATCLIKSLYESMGLRTGMLNSVASFVHGDNKLELGSAALDAVLVQNLMAKMIHNGTEAVVMEAGSHGLEEGKYDEVDFDIAVFTNLSQDKEGDRNAQAKLFSRMVDPERHRKVVNIDDPNAPFFVSQGSQEVPVVTFAMENKDADVHPLKFELSLFETQVLVNTPTGILEISSGLLGKHNIYNILAAVAVGIAVGAPLEDIVRGIEEVDAVPGRCELIDEEQAFGVIVDHASTPDSLSRLLDSVRELGPRRIITVIGCCGEGDRGKRPAMTKIATDKSEVTMLTSDNPKNEDPLDILDDMLSGVGWSMQDYLKYGENDYYPPLPNGHRLFLHDIRRVAVRAAVAMGEEGDVVVVTGKGHEAYQIEGDKKEFFDDREECREALQYVDELHQAGIDTSEFPWRKGQKAGKRKPQINSLQIPRCA 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04416 767 SUPERFAMILY MurD-like peptide ligases, catalytic domain 328 553 IPR036565 GO:0005524|GO:0009058
Vimu11g04416 767 Gene3D - 226 326 - -
Vimu11g04416 767 Gene3D - 328 559 IPR036565 GO:0005524|GO:0009058
Vimu11g04416 767 Pfam Mur ligase family, glutamate ligase domain 556 639 IPR004101 GO:0009058|GO:0016881
Vimu11g04416 767 SUPERFAMILY MurE/MurF N-terminal domain 225 328 IPR035911 -
Vimu11g04416 767 PANTHER MUR LIGASE FAMILY MEMBER 180 737 - -
Vimu11g04416 767 Hamap UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 225 727 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
Vimu11g04416 767 SUPERFAMILY MurD-like peptide ligases, peptide-binding domain 556 728 IPR036615 GO:0009058|GO:0016881
Vimu11g04416 767 FunFam UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase 561 734 - -
Vimu11g04416 767 Pfam Mur ligase family, catalytic domain 248 325 IPR000713 GO:0009058|GO:0016881
Vimu11g04416 767 Pfam Mur ligase middle domain 337 535 IPR013221 GO:0005524|GO:0009058|GO:0016881
Vimu11g04416 767 MobiDBLite consensus disorder prediction 60 81 - -
Vimu11g04416 767 Gene3D - 561 738 IPR036615 GO:0009058|GO:0016881
Vimu11g04416 767 NCBIfam UDP-N-acetylmuramyl-tripeptide synthetase 247 728 IPR005761 GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04416 - - gmx:100776096 1253.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04416 11 65282128 65285862 Vimu11g04416 11 65282128 65285862 ECH