Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04410 ATGTCTGAAAGCAATAAATCACCCAAAAATGATCATCAGTCCATAAAATATTGGCGGATTCAACAGGGAGGAGCGTCCTCTCAGACGGATCTTTCGGGTGTAGATTATTCGCCTTCTCTTTCCAACAAGGAGAATAAGCAACAGTATGGAAGTTGTCAACCGAAGTCCCCTCAGATACTGAGCACAGCTCAGCTCATCTCTGCAATAGGTCAGGTATGCGATTCTGCAAGTCAATCGCTTTCGGTTTTACTCCCAAAGGAAAATTTGAATCAGGATGATAACGGATTCTCAAAAGAGAAATTTCTGGATAACATTGGAGAGAGAAAGAATAACCTGGTATATACTTCGAATGGCACTAAATTCTATCCTCTTACTGCGGGTGCTGCAAAGATTGTGCGGGAAAGATTGGATTTTCCTAAGGTAATGCAGAAGATATTAGTGTTTGAATCTCCTAATGAAAGTCAAGATTATATCCATTCTTTATTCCAGAGGTTATCAAAGGCTAGTGATAAAATAACAAATAAAGACTGTAAGAAAATGAAACTTGCGAGGGAGGAAATGTCATTTAAATCTGGAAATGTATATCGGTGGGCATGTAGAAATGCTGTCGAGATGCTAACTTGTCAAATGAATTTTACCCAGCCTGAGAATCTGGAAGCTAATTCCTCAGTTTCTGGCGGTGGCATTTCCTTACATACAAGCACCCCTGCATTGGCAAACGAGGAGAGGGATGTGTGCAATTCAATCACACACCAAAGTAAATCATTGACCAATGCTGCAATTCCGAACACAAGAATAGTTAGCCCACTGAGTTCAGACTATTTTCTGCAAGCTGTACCCCATGCTAAGGCAGAAGTTGGTGATTGTCAGAAACTTTCTTCTAGTATCAATGCGGACTGTCACAGTAACAGTTTAGCTTCATGTACTAGTGCTTCTGAGCAGTGCCAACATGGCATTGATGAAAATGAATCACTGGAAGTCCAAGGAAGGTATTTGTTGGATATAACTAATGATGAACCTAAGCTTCAGACTTTCTCTGCAACCCATCCGAAGCCTGGTAATTCCCAAGCCAAGCCAGAACATGCTTTTTCTGGGGCGTTAGCTGGTGTATGTGTCAGCCTTTGTCTGCATCCTGTTGACACAATTAAGACAGTTATTCAATCATGCCGTGCTGAACACCGGTCCATCTTTTACATTGGCAAATCAATTGTTTCTGATAGAGATGATGGACTGATTTCAGGTTTGCTTGGACTATATCGTGGAATTACCACAAATATTGCATCTTCAGCTCCAATTTCTGCAGTTTATACCTTTTCCTATGAATCAGTCAAAGCAGCTTTGCTTCCTTATCTTCCAAAGGAGTATCATTCTTTTGCCCATTGTGTAGGAGGTGGTTGTGCAAGCATTGCCACATCTTTCATTTTTACTCCTAGTGATCGAATAAAGCAGCAGATGCAAGTTCGTTCTCATTATCGCAACTGTTGGTATGCCTTGGTTTTTTGTAATATCATCACCTTTCTTGACATAGAACTGCTTGCTTTGAAGATGCTTGCTATGTCTGTGCATAGGTTCATGGGTTCAAACTTTAACTGGAACTTTCCCCTAAATGGGGGTTTTACCTCCCTATATGCAGGTTGGATAGCTGTACTATGCCGGAATGTTCCACATTCAATTATCAAGTTTTACACATATGAAAGTTTGAAGGAAGTGATGCCACCAAGTGTTCAACCCAACACATTTCAAACTTTAGTATGTGGAGGATTAGCTGGATCTACTGCTGCTTTATTCACAACTCCTTTTGATGTGATCAAGACTAGATTACAGACACAGATTCCTGGATCTGCAAACCAATACGATAGTGTGCTCCACGCCCTCCAAAAAATTAGTAAGGGTGAAGGTGTGAAAGGCTTGTACAGTTCAGAAGAAAACATCTTTTTAGGAGCCACTGATTATTTACCTTCCTGGGATCTCTGTTCAAATGCAAATTGTACCATGACCTTTTTTGTTTGTGTGCTTTGTATGGCTGTCATCAGGGGGTTGATTCCACGGTTGATTATGTACATGACGCAAGGATCACTGTTTTTTGCTTCATATGAATTTTTCAAGAGGGCATTTTCTCTGGAAGCATCACATCTCACTGATTTATGCGTCCAGGCCAATGACAGAGATGCTGAGAGAGAGAAAACTAGGAAGTAA 2196 0.4076 MSESNKSPKNDHQSIKYWRIQQGGASSQTDLSGVDYSPSLSNKENKQQYGSCQPKSPQILSTAQLISAIGQVCDSASQSLSVLLPKENLNQDDNGFSKEKFLDNIGERKNNLVYTSNGTKFYPLTAGAAKIVRERLDFPKVMQKILVFESPNESQDYIHSLFQRLSKASDKITNKDCKKMKLAREEMSFKSGNVYRWACRNAVEMLTCQMNFTQPENLEANSSVSGGGISLHTSTPALANEERDVCNSITHQSKSLTNAAIPNTRIVSPLSSDYFLQAVPHAKAEVGDCQKLSSSINADCHSNSLASCTSASEQCQHGIDENESLEVQGRYLLDITNDEPKLQTFSATHPKPGNSQAKPEHAFSGALAGVCVSLCLHPVDTIKTVIQSCRAEHRSIFYIGKSIVSDRDDGLISGLLGLYRGITTNIASSAPISAVYTFSYESVKAALLPYLPKEYHSFAHCVGGGCASIATSFIFTPSDRIKQQMQVRSHYRNCWYALVFCNIITFLDIELLALKMLAMSVHRFMGSNFNWNFPLNGGFTSLYAGWIAVLCRNVPHSIIKFYTYESLKEVMPPSVQPNTFQTLVCGGLAGSTAALFTTPFDVIKTRLQTQIPGSANQYDSVLHALQKISKGEGVKGLYSSEENIFLGATDYLPSWDLCSNANCTMTFFVCVLCMAVIRGLIPRLIMYMTQGSLFFASYEFFKRAFSLEASHLTDLCVQANDRDAEREKTRK 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04410 731 Gene3D Mitochondrial carrier domain 531 640 IPR023395 -
Vimu11g04410 731 Gene3D Mitochondrial carrier domain 336 516 IPR023395 -
Vimu11g04410 731 Pfam Mitochondrial carrier protein 360 447 IPR018108 -
Vimu11g04410 731 Pfam Mitochondrial carrier protein 578 639 IPR018108 -
Vimu11g04410 731 Pfam Mitochondrial carrier protein 455 571 IPR018108 -
Vimu11g04410 731 MobiDBLite consensus disorder prediction 14 54 - -
Vimu11g04410 731 MobiDBLite consensus disorder prediction 1 54 - -
Vimu11g04410 731 ProSiteProfiles Solute carrier (Solcar) repeat profile. 356 446 IPR018108 -
Vimu11g04410 731 ProSiteProfiles Solute carrier (Solcar) repeat profile. 577 665 IPR018108 -
Vimu11g04410 731 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 320 709 - -
Vimu11g04410 731 ProSiteProfiles Solute carrier (Solcar) repeat profile. 455 570 IPR018108 -
Vimu11g04410 731 SUPERFAMILY Mitochondrial carrier 360 639 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04410 Vimu-Chr11 65234437 65238116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04410 364 640 Organic Solute Cotransporters AT4G26180 25.442 1.41e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04410 - - pvu:PHAVU_002G289600g 1073.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04410 11 65234437 65238116 Vimu11g04410 11 65234437 65238116 ECH