Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04407 ATGGTTGAATCAATTGCCGCAACTTCACTCCTTGGCCACCGTCCAATTTTTGGTGGAATTTTGGCCAGGGATGTATCTGTTAAACGAAAATCTTTGAATTCTTGTCGGCTGCCAACAACCGAGTTTCTTGGTGGTGGAAGGATTGTGGTTTCTTTGACTTTGCCTAAATCTTATAAGCAAGATAGGGTTATGTTCTCATCAATTAAGGCTTTGGCTGTGGAGTTAACAAGAGAAGCACATGCTTACAGGGAAGAGAAATTGCCCAATAGAGATAATAGCAGGATTGATAGTGGATTTGATCAAAGGCCTGATTCGTGGCCTCCGGCTAATAGAGCCGATAACCCCTCCCTCCGGAATCCGTTGCTCCGGCATGAGAGGATGGGGTGTGGTTGGTTGGGTGCTATATTTGAGTGGGAGGGAGTTCTTGTTGAGGACAATCCTGATTTAGAGAAGCAGGCTTGGCTGGCACTCTCCCAGGAAGAAGGCAAACCTTCTCCTCCTGCTTTTATCCTCAAGAGAGTAGAAGGCATGAAGAATGAACAGGCAATTTCAGAAGTTCTGTGTTGGTCGAGGGATCCGGGGCAATTAAGAAGAATGGCTAATAGAAAGGAAGAAATCTACCAAGCTTTACAGGGTGGGATATATAGTTTCATGTCTGGTTCCAAGGAGTTTGTTAGTGTTTTAATGCATTATAAGATACCAATGGCATTGGTTTCCACGCGTCCTAGGAAGGCTATTGAGTCTGCTATAGGGGAGATCGGGATTGAGGACAATTTCAGTGTCGTTGTGGCAGCAGAGGATGTTCACAGGGGAAAGCCTGATCCTGAAATGTTTGTTTATGCTGCACAGCTTTTGAACTTAATACCTGAGAGGTGCATTGTGTTTGGAAACTCCAATCTAACAGTGGAGGCTGCACACGAAGCACGGATGAAATGTGTGGCTGTTGCTAGTAAGCATCCTGTCTATGAGCTTGGGGCTGCAGACTTGGTTGTCAGGCGCCTGGACGAGCTTTCTGTGGTTGATTTGAAGAATCTCGCAGACATTGAAATGACTGAATTTGGGTCTCCAGAGCCTGAGGTGGAGCTGGAGATGGAAGAAGATTATGACCCATCATCTGTTGATGACAATTTCTGGTAA 1137 0.4556 MVESIAATSLLGHRPIFGGILARDVSVKRKSLNSCRLPTTEFLGGGRIVVSLTLPKSYKQDRVMFSSIKALAVELTREAHAYREEKLPNRDNSRIDSGFDQRPDSWPPANRADNPSLRNPLLRHERMGCGWLGAIFEWEGVLVEDNPDLEKQAWLALSQEEGKPSPPAFILKRVEGMKNEQAISEVLCWSRDPGQLRRMANRKEEIYQALQGGIYSFMSGSKEFVSVLMHYKIPMALVSTRPRKAIESAIGEIGIEDNFSVVVAAEDVHRGKPDPEMFVYAAQLLNLIPERCIVFGNSNLTVEAAHEARMKCVAVASKHPVYELGAADLVVRRLDELSVVDLKNLADIEMTEFGSPEPEVELEMEEDYDPSSVDDNFW 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04407 378 Gene3D Putative phosphatase; domain 2 144 217 IPR023198 -
Vimu11g04407 378 NCBIfam HAD-IA family hydrolase 250 315 IPR006439 -
Vimu11g04407 378 PANTHER 5-AMINO-6-(5-PHOSPHO-D-RIBITYLAMINO)URACIL PHOSPHATASE, CHLOROPLASTIC 1 378 - -
Vimu11g04407 378 MobiDBLite consensus disorder prediction 84 117 - -
Vimu11g04407 378 Gene3D - 134 332 IPR023214 -
Vimu11g04407 378 SUPERFAMILY HAD-like 134 337 IPR036412 -
Vimu11g04407 378 CDD HAD_BPGM-like 195 317 - -
Vimu11g04407 378 MobiDBLite consensus disorder prediction 84 98 - -
Vimu11g04407 378 Pfam Haloacid dehalogenase-like hydrolase 151 315 IPR041492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04407 Vimu-Chr11 65201847 65204857 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04407 K22912 - gmx:100798181 682.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04407 11 65201847 65204857 Vimu11g04407 11 65201847 65204857 ECH