Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04405 ATGCAAGTTCTTGTCCCTTTCCACGTCCAGCTCATTACACTACTTGGAGTAAGACACAGCCCCTTCCCAACAAACCCACATGAACCTATTAATTCAACTTCCATTCATTTTTATTTTCATGTTGAAACTAAGAAAATCAAGTACCATTTTTATAAATCTTATCATCCCCTTTTGCCTTGTCCCTACAAAAGGACCAGCCCCTCTTCCTCTTCCTCTTCCCTTCTCAACTTCTGCTGCATCTCTACCCTCTTCAATATGAGAGAAATCCTCCATGTTCAAGCTGGCCAATGTGGCAATCAAATCGGAGGCAAGTTTTGGGAGGTCATGTGTGATGAACATGGCATAGATGCCACTGGAAATTACATTGGGGACTCTCATCTTCAACTTGAGAGGGTTAACGTCTACTACAATGAAGCTAGTGGAGGACGCTATGTTCCTCGAGCTGTGCTTATGGACCTTGAACCGGGGACCATGGACAGCTTGCGATCTGGTCCTTATGGGAAAATTTTCAGGCCTGATAACTTTGTCTTCGGTCAAAACGGAGCTGGAAACAACTGGGCCAAGGGGCATTACACTGAGGGAGCAGAGCTTATTGATTCTGTTCTTGATGTTGTTCGTAAAGAAGCTGAGAACTGTGACTGCTTGCAGGGGTTTCAAATTTGCCACTCACTGGGAGGTGGAACTGGGTCTGGAATGGGTACCTTGCTGATCTCAAAGATCAGAGAAGAGTATCCAGATAGGATGATGTTGACATTCTCAGTGTTCCCTTCTCCTAAGGTTTCTGACACAGTAGTTGAACCCTACAATGCTACTCTCTCTGTTCATCAACTGGTTGAGAATGCAGATGAATGCATGGTCCTTGACAATGAAGCACTCTATGATATCTGTTTCCGAACATTAAAGCTCACAAATCCAAGTTTTGGTGATCTGAACCATTTGATCTCAACAACAATGAGCGGAGTAACGTGCTGCCTCCGCTTCCCCGGCCAACTCAACTCCGACCTCCGCAAGCTGGCCGTGAACCTCATCCCCTTCCCGCGGCTCCACTTCTTCATGGTGGGTTTCGCGCCGCTAACCTCCCGCGGCTCCCAGCAGTACCGCTCCCTCACGATCCCGGAGCTGACCCAGCAGATGTGGGACGCGCGCAACATGATGTGCGCCGCCGACCCCCGGCACGGACGCTACCTGACGGCGTCGGCGATGTTCCGCGGGAAGATGAGCACGAAGGAGGTGGACCAGCAGATGATAAACGTGCAGAACAAGAACTCGTCGTACTTCGTGGAGTGGATTCCCAACAACGTGAAGTCGAGCGTGTGCGACATTCCCCCCACCGGCCTCTCCATGTCGTCCACCTTCATGGGCAACTCCACCTCCATCCAGGAGATGTTCCGGCGCGTCTCCGATCAGTTCACCGTGATGTTCAAGAGAAAGGCTTTCTTGCATTGGTACACCGCGGAGGGCATGGACGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAACGACTTGGTGGCTGAGTACCAGCAGTATCAAGACGCCGCCGCCATGGAAGAGGGAGAGGTTGACGAGGACGAAGAGGATGAGCTGGCTGCATGA 1596 0.5056 MQVLVPFHVQLITLLGVRHSPFPTNPHEPINSTSIHFYFHVETKKIKYHFYKSYHPLLPCPYKRTSPSSSSSSLLNFCCISTLFNMREILHVQAGQCGNQIGGKFWEVMCDEHGIDATGNYIGDSHLQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRSGPYGKIFRPDNFVFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQICHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTIPELTQQMWDARNMMCAADPRHGRYLTASAMFRGKMSTKEVDQQMINVQNKNSSYFVEWIPNNVKSSVCDIPPTGLSMSSTFMGNSTSIQEMFRRVSDQFTVMFKRKAFLHWYTAEGMDEMEFTEAESNMNDLVAEYQQYQDAAAMEEGEVDEDEEDELAA 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04405 531 SMART Tubulin_C_4 331 468 IPR018316 -
Vimu11g04405 531 SMART Tubulin_4 132 329 IPR003008 GO:0005525
Vimu11g04405 531 Gene3D Tubulin/FtsZ, GTPase domain 86 347 IPR036525 -
Vimu11g04405 531 PRINTS Tubulin signature 275 295 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Tubulin signature 217 235 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Tubulin signature 455 483 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Tubulin signature 136 155 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Tubulin signature 178 189 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Tubulin signature 236 257 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Tubulin signature 261 274 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Tubulin signature 95 115 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Tubulin signature 191 215 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 Pfam Tubulin C-terminal domain 346 467 IPR018316 -
Vimu11g04405 531 FunFam Tubulin beta chain 459 530 - -
Vimu11g04405 531 Coils Coil 493 527 - -
Vimu11g04405 531 PRINTS Beta-tubulin signature 126 143 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 497 515 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 193 211 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 173 184 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 396 414 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 350 366 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 432 455 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 462 473 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 297 309 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 414 428 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 237 249 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 315 324 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 PRINTS Beta-tubulin signature 330 343 IPR002453 GO:0003924|GO:0005200|GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 CDD beta_tubulin 87 511 - -
Vimu11g04405 531 Gene3D Helix hairpin bin 459 530 IPR023123 -
Vimu11g04405 531 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 225 231 IPR017975 GO:0005525|GO:0005874|GO:0007017
Vimu11g04405 531 FunFam Tubulin beta chain 349 458 - -
Vimu11g04405 531 SUPERFAMILY Tubulin nucleotide-binding domain-like 86 328 IPR036525 -
Vimu11g04405 531 SUPERFAMILY Tubulin C-terminal domain-like 329 513 IPR008280 -
Vimu11g04405 531 Gene3D - 348 458 IPR037103 -
Vimu11g04405 531 FunFam Tubulin beta chain 86 347 - -
Vimu11g04405 531 PANTHER TUBULIN 88 511 IPR000217 GO:0005874|GO:0007017
Vimu11g04405 531 Pfam Tubulin/FtsZ family, GTPase domain 88 296 IPR003008 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04405 Vimu-Chr11 65183782 65186709 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04405 K07375 - gmx:100797652 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04405 11 65183782 65186709 Vimu11g04405 11 65183782 65186709 ECH