Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04396 ATGAGAATGAGGAGGAGCAGGAGAGCCACCAACCAGAACTTCTCGGTACACCCTCAGATGGAGGTTAATATGTCTAGTTACCTACAATATATGGAAATGATGTTGCTTGGTAATAGTGGGACACATTGCTGCAACTGTTTGATGATGGAAGAAGAGGGAAAAATAACAAAAGGAAAATATGCTGCTGATATTTCCTCCATAAGAGAAGCACAAGATCGAATCAAATCATTGGTTCATAAAACTCCGCTTCTGTCCTCCACCTCGCTGAATGTTTTGTCAGGAAGGCAGCTCTACTTTAAGTGTGAATGTTTACAAAAGGGGGGAGCTTTTAAATTTAGAGGTGCCTGCAATGCTGTGTTCTCTCTCAATGATGAGGATGCTTCTAAAGGGGTTGTAACACACAGCAGAATCTGTCAAGCTCTTCTGATCGTGTTCTACAAAATCAGTGGAAACCATGCTGCAGCATTGGCTTTGGCCGCTAAACTACGGGGGATCCCTTCATATATTGTTATTCCAAAAAATGCCCCAACTTGCAAAATTGAGAATGTAAAGCGGTATGGTGGTCAGATTGTCTGGGAAGAAGTTGCAAACAAAGTGTGGCAAAAAACTGGTGCTATCTTTATACATCCGTATAATGATGGACGCATATTAAGGTACAAGTACAATTGGCCAGGGTACCATATCCCTGGAGATTCTGGAGCAAGCCCCACATATAGATACGCTAGTGGTGGTGGTTTGATATCTGGAATAGCATTGGCTGCCAAGTCCGTCAACCCAGCTATTCGTATTTTAGCTGCTGAACCTAAAGGGGCTGATGATGCCGCCCAATCTAAAGCAGCTGGGAGGATAATAAGATTGCCTGAGACAGATACTATAGCTGACGGTCTTCGAGCATTTCTTGGAGATATCACATGGCCTGTAGTACGAGATCTTGTTGAGGACATTATAACTGTTGAAGACAGTGAAATAATCAAAGCTATGAAACTGTGTTTTGAAGTTCTTAAGGTTGTTGTAGAACCAAGTGGAGCAATTGGCCTTGCTGCTGTTCTATCCGATACCTTCCAGAATAATCCTTCTTGGAAGGAATGCAATAACATAGGAATAGTACTTTCAGGAGGCAATGTTGATCTGGCTGTGCTTTGGGATTCTTTGAAGAAAGGAAAATGA 1167 0.4233 MRMRRSRRATNQNFSVHPQMEVNMSSYLQYMEMMLLGNSGTHCCNCLMMEEEGKITKGKYAADISSIREAQDRIKSLVHKTPLLSSTSLNVLSGRQLYFKCECLQKGGAFKFRGACNAVFSLNDEDASKGVVTHSRICQALLIVFYKISGNHAAALALAAKLRGIPSYIVIPKNAPTCKIENVKRYGGQIVWEEVANKVWQKTGAIFIHPYNDGRILRYKYNWPGYHIPGDSGASPTYRYASGGGLISGIALAAKSVNPAIRILAAEPKGADDAAQSKAAGRIIRLPETDTIADGLRAFLGDITWPVVRDLVEDIITVEDSEIIKAMKLCFEVLKVVVEPSGAIGLAAVLSDTFQNNPSWKECNNIGIVLSGGNVDLAVLWDSLKKGK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04396 388 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 102 115 IPR000634 GO:0006520|GO:0030170
Vimu11g04396 388 CDD Thr-dehyd 64 376 - -
Vimu11g04396 388 PANTHER SERINE / THREONINE RACEMASE FAMILY MEMBER 242 379 - -
Vimu11g04396 388 FunFam Threonine dehydratase catabolic 110 211 - -
Vimu11g04396 388 Pfam Pyridoxal-phosphate dependent enzyme 77 371 IPR001926 -
Vimu11g04396 388 Gene3D - 73 376 IPR036052 -
Vimu11g04396 388 Gene3D - 110 211 IPR036052 -
Vimu11g04396 388 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 64 379 IPR036052 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04396 K12235 - gmx:100799758 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04396 11 65130018 65132740 Vimu11g04396 11 65130018 65132740 ECH