Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04392 ATGGAGGAACCTCCAACTTCAGTTCCGGCGACAGCGTCATGCTGGAGCAACGTGGTGAAGAAGCAGCCACCTCCACCACCGCAGCACAACGTTCCAGTTTTGGTGGAAACCACCGAATCCTCCAATGCCATCGCCGTCGCCGTTGTGGACGCCAACGCAATCATCGAATCCGGCGAAAAGCTCCACGGCCTCGCCGACAAGTTCATCTCCATCCCTGAAGTTATGGAGGAAATCCGTGACCCCGTTTCCCGCCACAAACTCTCTTTCCTCCCCTTCTCCATTCAAACCATGGAACCCTCCCCGGAATCCATCAATAAAGTTGTCAAATTTGCTAGGGCTACTGGTGACCTACAAACTCTATCTGATGTTGATATCAAGCTCATAGCTCTGACTTACACGTTGGAGGCTCAGATTCATGGGACCAAAAATCTCAGGGATGCCCCTCCCCCTGTGCAGACGTTGAATGTGAAGAGGTTGCCTGAGAAGGATATGCCGGGGTGGGGTTCTAACGTGCCTAATTTGCAAGAGTGGGAGGCATTGGAACAGGCGGAAGACTATGTGAATTCCAATTCGAAAATCCTTCCTTTGCAGGACCTGAACCTGAACATTGTTTCTCCTGATGATCACTCTGTGGACGGTTCTGTGGAGAGGACGAGTGAAGCTGATTCGGGGATTCAGGAGGGCGGTGAGGATGGTTTTACGAAGCCTAGGAGATTCACGCCTAAGAAAAAGGAGATAAAAATTGAGGGGAAAACAATGGTGGCTGATGGAGTCGATGCGTCGCAGGGCGAGTTTGATGACAATGCTGGTGATTGGATGCCGGCTGTCAGTCGGAGTACTCACAGGAGATACTTGAGAAGGAAAGCTAGACGTGAGTATCATGAGTCTATATCCAGCACTCAAGATGAACAAGATTTGGAAGGAAAGGATGATAATGTTGGTGAGGATGTTAATGTTTTAAATCAGCAAGTTCATGAACAGGATCCTGAACAAGTTGAAAATGCGGTGTCTGAGAATAATGAGGTGGTAAAAGAGAACAAAGACAATGAAAGTATATATGAGATTCTCCAGCAAATGAGACTGGAGGAAGCTTCTCTTGAAGTTCTTGATGAGGAAAATAAGCCAAGTTTATCTTCCGAAGAACTCCAGTCGGACAATACTGGATTGGTGGAAACTGTACCTGATGGCAATGCAGATGTGGTCACTAAACCACGGGACAGTGAGATAGATACAGTTGATAGCCAATCAAATCACTTGGAAATTGCAAGCCAGACCAGTGTAGCTGCTGACTTTTCATATGCTGATGATGATGGTAGTGAGCAAAGTTGGATGGTTAGATCTTTGTCTGAATCAAGCGTAGCGTGTGTAACCGGTGACTTTGCAATGCAAAACGTTCTTCTCCAAATGGGTTTGCGCTTACGGGCACCCGGAGGAACACAGATACACCAGCTGCACAGATGGATACTCAAGTGTCATGCCTGTTACACTGTGACTGCTGAGATTGGAAGAATTTTCTGTCCAAAGTGTGGAAATGGCGGCACACTAAGAAAGGTTGCTGTCACAGTTAATGAAAATGGAATAGTAGTTGCAGGCCGCCGACCACGGGTTACATTACGTGGCACAAAGTTTTCATTGCCTTTACCCCAAGGTGGAAGGGCTGCAGCCACAAAGAACCCCATTCTCCGTGAAGACCAACTTCCTCAAAGGGTACTTTATCCCAAAACGAAGAAGAAAACCAGCAAACAGGATGATGACTTTTTTACACCAGACAGTGTCTTCAGCCACCACACTGATAAGAAAGCTCCTTTCCAGCCTCCTATAAGGAAAGCAATGGCAGTTTTCGGAGGAAGGAGAAATCCAAATGACAATCACTACTCACGCTCCAAGCATAAATAG 1896 0.471 MEEPPTSVPATASCWSNVVKKQPPPPPQHNVPVLVETTESSNAIAVAVVDANAIIESGEKLHGLADKFISIPEVMEEIRDPVSRHKLSFLPFSIQTMEPSPESINKVVKFARATGDLQTLSDVDIKLIALTYTLEAQIHGTKNLRDAPPPVQTLNVKRLPEKDMPGWGSNVPNLQEWEALEQAEDYVNSNSKILPLQDLNLNIVSPDDHSVDGSVERTSEADSGIQEGGEDGFTKPRRFTPKKKEIKIEGKTMVADGVDASQGEFDDNAGDWMPAVSRSTHRRYLRRKARREYHESISSTQDEQDLEGKDDNVGEDVNVLNQQVHEQDPEQVENAVSENNEVVKENKDNESIYEILQQMRLEEASLEVLDEENKPSLSSEELQSDNTGLVETVPDGNADVVTKPRDSEIDTVDSQSNHLEIASQTSVAADFSYADDDGSEQSWMVRSLSESSVACVTGDFAMQNVLLQMGLRLRAPGGTQIHQLHRWILKCHACYTVTAEIGRIFCPKCGNGGTLRKVAVTVNENGIVVAGRRPRVTLRGTKFSLPLPQGGRAAATKNPILREDQLPQRVLYPKTKKKTSKQDDDFFTPDSVFSHHTDKKAPFQPPIRKAMAVFGGRRNPNDNHYSRSKHK 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04392 631 Gene3D - 38 150 - -
Vimu11g04392 631 Gene3D - 475 549 IPR036283 -
Vimu11g04392 631 MobiDBLite consensus disorder prediction 574 606 - -
Vimu11g04392 631 MobiDBLite consensus disorder prediction 291 345 - -
Vimu11g04392 631 Pfam PIN domain of ribonuclease 48 134 IPR033411 -
Vimu11g04392 631 MobiDBLite consensus disorder prediction 576 603 - -
Vimu11g04392 631 MobiDBLite consensus disorder prediction 373 397 - -
Vimu11g04392 631 MobiDBLite consensus disorder prediction 210 237 - -
Vimu11g04392 631 Pfam Nin one binding (NOB1) Zn-ribbon like 481 551 IPR014881 -
Vimu11g04392 631 FunFam 20S-pre-rRNA D-site endonuclease NOB1 38 158 - -
Vimu11g04392 631 PANTHER RNA-BINDING PROTEIN NOB1 34 629 IPR039907 -
Vimu11g04392 631 SUPERFAMILY NOB1 zinc finger-like 481 544 IPR036283 -
Vimu11g04392 631 CDD PIN_Nob1-like 48 159 IPR033411 -
Vimu11g04392 631 MobiDBLite consensus disorder prediction 291 314 - -
Vimu11g04392 631 MobiDBLite consensus disorder prediction 316 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04392 Vimu-Chr11 65114221 65116987 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04392 K11883 - gmx:100785714 1015.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04392 11 65114221 65116987 Vimu11g04392 11 65114221 65116987 ECH