Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04349 ATGCAGTATTTTTCCTCTAGTAAATCTTTTGATGATTTTCCAAAGCAAATAGCTTATGAATACGCAAGACGAGGAGCAAAGCTTTCCCTGGTTGACATAAGAAAGGAGAAACTCGTGGCAGTGAGTGATAAAGCAAGATCTCTGGGTTCTCCTGATGTTACCACCATTGCTGCTGATGTATCCAAGGTCCAAGACTGCAAACGCTTTGTTGACGAAACATTCAACTACTTCGGAAGACTGGATCATCTGGTAAATAATGCAGGAATCAGTGGTAAGCCTGTAACTGTGGAGAATATGCGTGATGTTTCTGAATACACTGCAGTTATGGATGTGAATTTTTGGGGAGCAGTTAATGCGACGTTATTTGCAATCCCACATCTGAAAAATAGCAAAGGAAGGATCATAGTGATTGCTTCAGTTTGCGGATGGTTCCCACCACCACTGATAAGTATCTATAATGCGAGCAAAGCAGCGATAACAAACTTCTTTGAGACTCTGAGAATGGAATCTGGAACTGCTATCGGCATAACAATTGCCACGCCCGGTTTTATCAAGACAGACCTTACATTAAAGGCCAAATTTGAATTAGAGGATGTTATGAGAATAGTTCCAATGGGGTCAGCTAGTGAATGTGGTAAAGCCATAGTTGAAAGTGCATGCAGGGGAGATATGTATGTTACATATCCTTCTTGGTACAAAGTGTTGTTTCCTTGGAAGGTGCTTCATCCTCAATTGGTAGATTGGGCCTTCAACTTGATCTTTCCAAACAAGTCTGCCATGAAAGGCACTCTCATGATGCCAGAGCATAAGGCAGAATAA 819 0.4151 MQYFSSSKSFDDFPKQIAYEYARRGAKLSLVDIRKEKLVAVSDKARSLGSPDVTTIAADVSKVQDCKRFVDETFNYFGRLDHLVNNAGISGKPVTVENMRDVSEYTAVMDVNFWGAVNATLFAIPHLKNSKGRIIVIASVCGWFPPPLISIYNASKAAITNFFETLRMESGTAIGITIATPGFIKTDLTLKAKFELEDVMRIVPMGSASECGKAIVESACRGDMYVTYPSWYKVLFPWKVLHPQLVDWAFNLIFPNKSAMKGTLMMPEHKAE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04349 272 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 16 253 IPR036291 -
Vimu11g04349 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 IPR002347 -
Vimu11g04349 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 IPR002347 -
Vimu11g04349 272 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 IPR002347 -
Vimu11g04349 272 PRINTS Glucose/ribitol dehydrogenase family signature 78 89 IPR002347 -
Vimu11g04349 272 PRINTS Glucose/ribitol dehydrogenase family signature 152 171 IPR002347 -
Vimu11g04349 272 PRINTS Glucose/ribitol dehydrogenase family signature 126 142 IPR002347 -
Vimu11g04349 272 PRINTS Glucose/ribitol dehydrogenase family signature 172 189 IPR002347 -
Vimu11g04349 272 Gene3D - 15 260 - -
Vimu11g04349 272 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 139 167 IPR020904 GO:0016491
Vimu11g04349 272 PANTHER RETINOL DEHYDROGENASE-RELATED 15 255 - -
Vimu11g04349 272 Pfam short chain dehydrogenase 15 191 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04349 Vimu-Chr11 64815074 64816945 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04349 55 206 Acyl Lipid Metabolism Gene Families AT1G24360 29.677 4.48e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04349 K22418 - gmx:100808990 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04349 11 64815074 64816945 Vimu11g04349 11 64815074 64816945 ECH