Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04348 ATGGTTTTCATTCATGGAATGTTGAACGTTCTCGTTCCCCCTCTAAGTCTGGCTATTCTAATGCTAATTTTACCACCATTTTTGTTATTCAAGATTCTCCGCTTCATCGTGAGATTAATTTTTAGAGAGAATGTAGCAGGAAAAGTGGTACTTATCACTGGAGCTTCCTCGGGCATAGGAGAGCACCTAGCATATGAGTATGCTAAAAGAGGGGCGCATCTAGCGCTTGTTGCTAGAAGAGAAAATCGAATAAAAGAGGTTGCCAACAATGCCAAATTACTTGGATCTCCTGATGTGATCACCATTCCTGCTGATGTTTCAAGACCCCAAGATTGTCGACGATTTGTTGAGTCAACAATCGACCACTTTGGACGATTGGATCATTTGGTGAACAATGCCGGAATAAATGCTGTCAGCATGTTTGAGGACACCACTGATATCACAAACTTTGCACCAGTAATGGACATTAACTTCTGGGGTTCTGCATATAGCACTTACTTTTCAATCCCCCACCTCAGACAAAGCAAAGGAAAGATCGTAGCAGTAGCTTCTTATACTGGATGGATGCCTGTTACGAGGATGAGTATCTACAATGCCAGCAAAGCAGCATTGATCAGCCTATATGAGACTCTGAGAACTGAATTGGGAAGAGACGTAGGAATAACTATAGTCACTCCAGTGCTGATAGAGTCAGAAATGTCTCAAGGGAAGATCCTATCCAAGGATGGCAAGATGGTTTTTGATCAACAAATAAGAGATATGGAAGTTGGTGTGGTGCCCATAAAATCAGTGACAGAAGCTGCCAAAGCAATTGTGAATAGCGTTTGCCGTGGGGACTCGTACTTGACAGAACCAGCTTGGTTTACGACAATGTTCTATTGGCAGATATTTTTCCCTGAAGTGTTAGGGTATCTTAACCGCCGGTCACTGACTTCGGAGTCTGCGGAGGAGGATCCAGCTAGCAGCAAGAATGTCCTTGATATTAAACTCTTGAAGAAATATATAAATCCCAAGTCAGTGAGAAGTCCCAATATCAAACCCAACTAA 1047 0.425 MVFIHGMLNVLVPPLSLAILMLILPPFLLFKILRFIVRLIFRENVAGKVVLITGASSGIGEHLAYEYAKRGAHLALVARRENRIKEVANNAKLLGSPDVITIPADVSRPQDCRRFVESTIDHFGRLDHLVNNAGINAVSMFEDTTDITNFAPVMDINFWGSAYSTYFSIPHLRQSKGKIVAVASYTGWMPVTRMSIYNASKAALISLYETLRTELGRDVGITIVTPVLIESEMSQGKILSKDGKMVFDQQIRDMEVGVVPIKSVTEAAKAIVNSVCRGDSYLTEPAWFTTMFYWQIFFPEVLGYLNRRSLTSESAEEDPASSKNVLDIKLLKKYINPKSVRSPNIKPN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04348 348 PRINTS Glucose/ribitol dehydrogenase family signature 197 216 IPR002347 -
Vimu11g04348 348 PRINTS Glucose/ribitol dehydrogenase family signature 49 66 IPR002347 -
Vimu11g04348 348 PRINTS Glucose/ribitol dehydrogenase family signature 217 234 IPR002347 -
Vimu11g04348 348 PRINTS Glucose/ribitol dehydrogenase family signature 124 135 IPR002347 -
Vimu11g04348 348 PRINTS Glucose/ribitol dehydrogenase family signature 171 187 IPR002347 -
Vimu11g04348 348 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 43 306 IPR036291 -
Vimu11g04348 348 Gene3D - 38 316 - -
Vimu11g04348 348 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 184 212 IPR020904 GO:0016491
Vimu11g04348 348 PANTHER RETINOL DEHYDROGENASE-RELATED 46 306 - -
Vimu11g04348 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 124 135 IPR002347 -
Vimu11g04348 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 197 216 IPR002347 -
Vimu11g04348 348 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 177 185 IPR002347 -
Vimu11g04348 348 Pfam short chain dehydrogenase 48 236 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04348 Vimu-Chr11 64803875 64806234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04348 43 234 Acyl Lipid Metabolism Gene Families AT1G24360 30.151 3.73e-17 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04348 K22418 - gmx:100787835 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04348 11 64803875 64806234 Vimu11g04348 11 64803875 64806234 ECH