Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04346 ATGCCCGTACGCCGTCTCAGACTCGATTCGGACACGGACGAAGAAGAACAACACCCACTCCAACCCCAACCACGGCCACAGCCACAGCCACAGCCACAGCCGCAGCCACAGCCGCAGCCACAGCCGCAGCCACATTTTCCGGAGGTTCCCGTTGAAATCTCCGACGACGACTTCATCGACGTCGCTGAAAGCCTCTCTCCGCCCTCCCCTTCCTGTCCAGTCTCTGACTTCCTCCGGCGCCTCGGTCTGTCTCTCAAGAGAGGCTGGCTCGCCTCCTGTCTCCGCCAACTCCAACTCTCTGTTACGTTATTCGAACACCTCGACGTTGCCGCGAAAGCCAAACGTTGTTTCGAGCAGTTCCTCTTCGCCGACATGAATTTATGTGGCGCCGGCGTTCTCCCTCCCGGCGTTGATTCCATGCACCTTCGCGTTCTCCCTGGTCCCTACGTTTTGCAGGTTGATGAAATAATTAACATCACTTGTCCCCTACGAGGAAGATACGAACAAGCACCTCCTGGACCTAAGAGGTGCCTCAAGTTGTCAATGACTGATGGTGTTCAGAGAGTCTTTGGAATGGAGTATAGGCCTATCAAAGCGCTTGAAGTTTGTGCCCCTTCTGGTTTAAAGGTTGCTATCTCTAACGTACATGTGCGTCGTGGACTTCTAATGTTGGTCCCTGAAACCATTGATGTTTTGGGGGGATTGGTTGAGGAGTTGGATGCTGCTCGAAAACGACTGGTTGAAGAAATAAACAAGCCACCTAGGGGGAAAAGAAACAAAAATGGAGAGCTCCCTCCTTTAGCTACTAGAGCAACACTTGCTGCGTGGCCTCCAGGTGGGGTTGATAATCGTGCGAGCAATGGCTCCACACTGCACAGTCCTGGCCGAAGCATACCTGGCACTATTAACAGCTTAACAACTGAAGATACTCTGTCCATGGGTGCACACAGTGCTCCTGCTAATTCAATACACCGCACGTCATCACATTCCATGGGTGCACACAGTGCTTTAACTACAGGTGCTGGCCGAAGCATACCTAGCACTGTTAACAGCTTAACAACTGAAGATACTTTATCCATGGATGCACACAGTCTTCCTGCTAATTCAATACACTGCATGTCATCACATTCCAACGCCATGAATGTGGATACGCCTAGGGATACCAATCCTGTATCCCATGCCAGTCCTATGTCTAACCGGCTCTCTTCTGTAATCTCAAAGGCCAAGGAGATGCACATAGATGCTTCTAATGCAAGGGAATGTTCTATTGACAATCAGTCTTCTAACATGGATTCAAATGTTGCAGCTGCACATATTGACACAGTTAATATAACACCAGAAAATTCTGTAGGTATTGAGTGCTCTCCTGTTGTTTACAATGTTGAGACAGATACAGATAGAACTCCTGTTGCTACAGATACTACTCTTCTGCATAGAACCTCATCCACTGCTTTAAACACTAGCGATGTCCAGATGGTTGATGCCCTTAACCATCCACTCATACTGTCTAGAGACCAAGAGGTTCCTTTCACATACATAGCTAGTTTGTCAGTCAAGTGGGCTAAAATGAAGGAGGAAGCTCCTTCCGTTCAGGGGAAAATCAAGTGCTTTTTGACTGGTGTAAAAGGATTCCAGTTTAAGAAAAGGACAACATATGAACTTCAGGCGTATGTAGACGATGGTAGCCTTATTTCTGAAATCCTTGTCGATCATAATGTTGTAGAGAAAGGAATTGGTTATTCTCCTGAGGAGGTAACTGCAGCTCTTTCTTCCCCTGACACAAAGATTGTCCACCAAATGAAGGATACAATGCGTAAATTTCAAGCCTTTTTAGCAAACTTTGAGGGAATAATTCTTGTGGAGTTCAATAAAAAAAACCCCCTTCCACTTGCTCTAGAGATGAGTCAAGGTTGTCCTCAGTCTGATGCATGGTTACTTCTGAGAAGGCTGAAGTCTCTTCAACCTCCACTACAAACTCTTCACCATAATACTCGAGTTCCGAGACCCTGCATAACTAAGATGGACATATGGGAGAATGACGATGTGAGAGAGCATTTGTTGCTGAACCAACCTGAAAAAAGACGAATGGCTTTGGGGGAAAGAGGAAAGAATCAAGATTATAATGTTATTAAAGGTTGCCTGGTATATAAACCACTGGTGAAGCACGGATTCGCTTTGTATATTTTCATTGTTCTTGGTGTAAAGGTGTTCCCATTGGAGGTTTATTTGTTGGATGATATTGTCTATATCTACACCTAA 2259 0.4635 MPVRRLRLDSDTDEEEQHPLQPQPRPQPQPQPQPQPQPQPQPQPHFPEVPVEISDDDFIDVAESLSPPSPSCPVSDFLRRLGLSLKRGWLASCLRQLQLSVTLFEHLDVAAKAKRCFEQFLFADMNLCGAGVLPPGVDSMHLRVLPGPYVLQVDEIINITCPLRGRYEQAPPGPKRCLKLSMTDGVQRVFGMEYRPIKALEVCAPSGLKVAISNVHVRRGLLMLVPETIDVLGGLVEELDAARKRLVEEINKPPRGKRNKNGELPPLATRATLAAWPPGGVDNRASNGSTLHSPGRSIPGTINSLTTEDTLSMGAHSAPANSIHRTSSHSMGAHSALTTGAGRSIPSTVNSLTTEDTLSMDAHSLPANSIHCMSSHSNAMNVDTPRDTNPVSHASPMSNRLSSVISKAKEMHIDASNARECSIDNQSSNMDSNVAAAHIDTVNITPENSVGIECSPVVYNVETDTDRTPVATDTTLLHRTSSTALNTSDVQMVDALNHPLILSRDQEVPFTYIASLSVKWAKMKEEAPSVQGKIKCFLTGVKGFQFKKRTTYELQAYVDDGSLISEILVDHNVVEKGIGYSPEEVTAALSSPDTKIVHQMKDTMRKFQAFLANFEGIILVEFNKKNPLPLALEMSQGCPQSDAWLLLRRLKSLQPPLQTLHHNTRVPRPCITKMDIWENDDVREHLLLNQPEKRRMALGERGKNQDYNVIKGCLVYKPLVKHGFALYIFIVLGVKVFPLEVYLLDDIVYIYT 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04346 752 MobiDBLite consensus disorder prediction 21 47 - -
Vimu11g04346 752 Pfam RecQ mediated genome instability protein 80 245 IPR013894 -
Vimu11g04346 752 MobiDBLite consensus disorder prediction 283 349 - -
Vimu11g04346 752 Gene3D - 124 250 IPR042470 -
Vimu11g04346 752 PANTHER RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 70 652 - -
Vimu11g04346 752 MobiDBLite consensus disorder prediction 1 20 - -
Vimu11g04346 752 FunFam RecQ-mediated instability protein (DUF1767) 124 250 - -
Vimu11g04346 752 MobiDBLite consensus disorder prediction 1 50 - -
Vimu11g04346 752 SMART DUF1767_2 75 168 IPR033472 -
Vimu11g04346 752 Pfam Recq-mediated genome instability protein 1, C-terminal OB-fold 509 650 IPR032199 GO:0000166
Vimu11g04346 752 MobiDBLite consensus disorder prediction 274 349 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04346 K10990 - gmx:100803734 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04346 11 64799417 64803342 Vimu11g04346 11 64799417 64803342 ECH