Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04345 ATGTCGTCTGAAACCCTAGAAAACGAGAAGCCTCAAGCGGAAGAAGTCCAAGACGAGGAAAATCACACCGAACAAGAAGATACTCCGACGAAGAACGACGTCAGCGAAAACAGCAACGTAAAAGAAAAGGATCGGGTAGAAGAAGAGACTGATGAGCGAGGCGAAGCGAAGTCTAGCAAGTCAGCAGAAGAAAGCGATTACGCTACGCCAACTAGTAAGAGACCAACTAGGGAGAGGAAAACGGTGGATAGGTACACTGCTTCTTCGTCCGATAAGTTTCACAAGGCTTCCTCTCTCAAAGCTTCGTCAATTGAAAAGGGCAACGGTACGCAGCTCAGGGACATTCCAAATGGTAAGGCCTCTTGTTGTTACATGGATTTGCTTTTGGCTTGTCTTGTTTCTTTACCTCCCTTCACTGCAATGGCTTCACGTGTGGCCATCTCCATGTCAATAATTAATAATGGTTACCATAGGATTTTAAATGTGCAGGATTCATTGACATTTGTTCAACACTCATCGTCTGACCTCTATGATCTTCCAAGATCTCCACAAACTACTTCGTTTCTGGCTTTCAAGTTATCAAAGAGAAAAGCTGACGAGAACCTGCATGCGCTTCATAAAATACTCTTTGGGCAAAGGGGAAAGGCAAACGCGGTAAAGAGAAATATAGGACTGTTTTCTGGCTATGTGTGGACTGACAATGAGGAAAAACAGAAAGCAAAGACAAAGGAGAAGATTGAGAAATGCGCGAAAGAAAAGTTGGTGGACTTCTGTAATGTGCTTAATATTCCGATAAATAAGACCACTATGAAGAAAGAGGAACTGTCTGCAAAGTTGTTTGAATTTTTGGTGTCCCCGCATGCTACAACTGATGTTCTTCTAGCCGACAAAAAAATGAAAGGTAAAAAGCGAGGCAGAAAGCCAACCCCAAACAAATCCGAAACACCTGCCAAGAAGCAAAAGAAAACCTCACTAGTTCGGAAAAAGCAAAAGCAGTCTTCTGACGTCGAGGAGAGTGATGTCTCTGAACCTTCCGAGGCAGAAGTTGATTCTGAGGAAGATGATGTTCCAAAAAGTGTAAGTGATCATGATGACGAAAACATGTCAGAGAAAGAGGAAGATAAAGAAAAGGTTCACAATGGGTCTTCGACGAAGACTCTGAATGAAGACCAAGACGAACCAGTAAAGAAGACTACTACAGTAGAGACAGCCAAGAGCAATGAAAAAACTCCAAAACGATCTACTTCGAAGTCCAAACAGTCTGCTTCCAATAAACAGAAAACAGTAAGGGAAAACCAGAATTCGAAAGGGAAGGTTGCAGACAAAAAACGAACCGACAAGTCTTCAAAGGCTTTAGTTAAGGATGGAGGAAAAGGTAAAAGTAGTGAGAAAGCTGAAGACGGACCCAGTAAGGATGAAATGCATCGAGTGGTAGTTGATATTTTAAAGAAAGTAGATTTCAATACGGCAACTTTATCCGATATCCTGAAACAACTTGGTACTCATTTTGATGTGGATTTAATGCATAGAAAAGCAGAGGTGAAGGATATAATTACAGATGTAATTAATAACATGTCAGATAACGATAAGGAGGAAGCATCAAACGTTGGAGATGATGACAGTGAAGACGAGGACGAGGCATTGTAG 1647 0.4177 MSSETLENEKPQAEEVQDEENHTEQEDTPTKNDVSENSNVKEKDRVEEETDERGEAKSSKSAEESDYATPTSKRPTRERKTVDRYTASSSDKFHKASSLKASSIEKGNGTQLRDIPNGKASCCYMDLLLACLVSLPPFTAMASRVAISMSIINNGYHRILNVQDSLTFVQHSSSDLYDLPRSPQTTSFLAFKLSKRKADENLHALHKILFGQRGKANAVKRNIGLFSGYVWTDNEEKQKAKTKEKIEKCAKEKLVDFCNVLNIPINKTTMKKEELSAKLFEFLVSPHATTDVLLADKKMKGKKRGRKPTPNKSETPAKKQKKTSLVRKKQKQSSDVEESDVSEPSEAEVDSEEDDVPKSVSDHDDENMSEKEEDKEKVHNGSSTKTLNEDQDEPVKKTTTVETAKSNEKTPKRSTSKSKQSASNKQKTVRENQNSKGKVADKKRTDKSSKALVKDGGKGKSSEKAEDGPSKDEMHRVVVDILKKVDFNTATLSDILKQLGTHFDVDLMHRKAEVKDIITDVINNMSDNDKEEASNVGDDDSEDEDEAL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04345 548 MobiDBLite consensus disorder prediction 339 353 - -
Vimu11g04345 548 SUPERFAMILY DEK C-terminal domain 463 523 - -
Vimu11g04345 548 PANTHER DEK PROTEIN 9 541 IPR044198 GO:0003677|GO:0006325
Vimu11g04345 548 FunFam DEK domain-containing chromatin associated protein 459 524 - -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 294 474 - -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 416 430 - -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 1 110 - -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 431 474 - -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 533 548 - -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 524 548 - -
Vimu11g04345 548 Pfam DEK C terminal domain 469 521 IPR014876 -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 389 415 - -
Vimu11g04345 548 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 468 523 IPR014876 -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 8 62 - -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 354 383 - -
Vimu11g04345 548 Coils Coil 232 252 - -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 91 110 - -
Vimu11g04345 548 Gene3D - 460 524 - -
Vimu11g04345 548 MobiDBLite consensus disorder prediction 70 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04345 Vimu-Chr11 64789219 64793682 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04345 K17046 - gmx:100785644 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04345 11 64789219 64793682 Vimu11g04345 11 64789219 64793682 ECH