Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04341 ATGGATGTCCGTATAAAAGAAGAAGTGTCGGAGACTCCAATTATAACTAAGAGGAAATCACGATCCGGCGCGGTGCCTCCTCCTGACTCCGTCATCGAAGTCAGCAGCAGCGACAGCGATTCGGAGAACGACGTTGATTCGGAGAACGGAGGAAGTCCTTCCAAAAAGCGAAGGACCGATGCTGAAATGGTTTTGCCTGTTGGATTCCTCAGCCCTCTCCCTCCGGCGGACTCTCCACCGACTGCTCTGCTGGCTTTGCCGGCGCCAGAGTGGGCTTCTAATTCCGCATCACGATCCAATTTGTATACTACACTGGGAGTGAATAGCTCCAAGCAGTTCTGGAAGGCTGGAGATTACGATGGTGCCGGCTGCGGTGGTTCTGATTCTTCAACAGTTGGTATGGATCATGTCAGAGTTCATCCCAAGTTTTTACACTCTAATGCCACAAGCCACAAGTGGGCTCTTGGAGCTTTTGCTGAGCTTTTGGACAATTCATTGGATGAGGTTTGTAATGGGGCGACATACGTTAATGTAGATATGCTTATAAATAAGAAAGATGGCTCCAGGATGTTGCTGATCGAAGATAATGGTGGTGGGATGGATCCTGAAAAAATGCGTCAATGCATGTCACTGGGGTATTCTGTGAAAAGCAAATTGGCAAACACAATTGGACAATATGGAAATGGCTTTAAGACAAGTACCATGAGGCTAGGGGCTGATGTAATTGTTTTCTCCCGTTTTCCAGGGAAAGATGGGACAAGCTCTACTCAAAGCATAGGCTTGCTGTCTTACACATTTTTGAGGAGTACGGGCAAGGAAGACATTGTAGTACCCATGTTGGACTATGAAAGAAGAGGACAACAATGGAATAAGATAATACGAACTACTCTGGATGATTGGAATAAAAATGTTGAAACAATGGTACAGTGGTCACCATTTTCTGATGAGGCTGATCTTCTTCGTCAGTTCAACTTGGTGAAAGATCATGGTACCCGAGTGATTATATACAATCTTTGGGAAGATGACCAAGGTCAACTGGAACTTGATTTCGATGCTGATCCACATGATATCCAAATAAGAGGTGTTAATCGAGATGAGAAAAACATACAGATGGCTAAAGAATTTCCAAATTCTCGACATTTTTTGACCTATCGGCATTCACTAAGGAGTTATGCTTCAATTTTATATCTGAGGCTTCCTTCCGCCTTCCGAATTATTCTTCGCGGGGAAGATATTTTGCATCACAACATAGTGAATGATATGATGATGTCTCAGGAGGTGACCTACAAGCCTCAAGCTGGAGTTGATGGGCTTCTTCCCAAGGACTCAAATATGGTTGCTGTTGTTACCATTGGATTTGTGAAGGATGCAGTTCACCATGTTGATGTTTCAGGTTTTAATGTTTATCATAAGAATCGACTCATTAAGATGTCCTTTCTAACAGTCATAAGCGGTTCCATGATAAAAAATCAATATGGACTTTGCCACTTGGTGGAGTTGTTCTATTTGTTTGTAGGATCCAAAAACATTGTCACAATTTTACGGATTGTTTTCTTGATTGTCAGCCTTTCTGGAGGATCTGGAATCCAGCTGGAAGTGGAGGACGTGGGGTCATTGGTTGAACCTTTTCTATGTGTCTTGGAAGCCAATTTTGTTGAACCTGCTCATGATAAACAAGGCTTTGAGCGTACATTAGTTTTATCAAGACTGGAGTCTAAATTGATACAAATGCAAAAAAAATACTGGGGCGCTAACTCTCATAAAATTGGTTATTCCAATCGATATAAAATACAAATAAGAGATTCTGGTGATAAAGACACATCTCCTGCATATGTTCCAGAACCATCAAAATCAAAAAGGAAATATTCTACCATGGATGGCAAGGTAACGCCGTTGACATCAGACAAATTGTATTCACAACCAAATCAGAAACGGATGCAAAAACAAACAGAAAAAGATAGTGCATTTATTAATGGCCGATCTCCTGTTTCTCCTCCTAAACATATAATACAAAGTTCATCCGAAGAATCATCCTCTGATGATGATGTCAGTGAGGATCTCTTGCCTAAAGGAAAAATTCAGAAGGCATCTACCGCTGAGAAATCAAAAGTTCAGAAGACATCTACCACTGAGAAATCATTCGAAAATGAGAATGGAGACACTACATCAAATAGAAAAGCCTCGCCGTACACACGGGCATCTGCATCCAAGATAAAGGGAAAGGATGTAAATAATAGCGACCTACCACTACCTGACAATGATTTACTGACAGCCGAGGAATTGAGAAAAGAGAACCGTGAGTTGAAGGAAAGATTACAGAGGAAGGAAGAGGAAATTTTAGAATTGTCTCAAGCTTTGCAGCATGACAAAGACAAGTGTAAATCTCTTGAAACTCAGCTAAACGAGTCAAAAAAAAAGATTGAAGAGTTGAACGGTGATCAAGAAACACTCATTGATGTATTCTCTGAAGAGAGGGAAAGACGTGAAGCTGAAGAGAAAAATCTAAGAAAGAAGCTTCAGGAGGCATCGAATACTATCCAAGAGCTGCTTGACAAGATACGGGTACTTGAAAAGAAGTCTACAAGTGGCAAACTAGAACGATAA 2604 0.4144 MDVRIKEEVSETPIITKRKSRSGAVPPPDSVIEVSSSDSDSENDVDSENGGSPSKKRRTDAEMVLPVGFLSPLPPADSPPTALLALPAPEWASNSASRSNLYTTLGVNSSKQFWKAGDYDGAGCGGSDSSTVGMDHVRVHPKFLHSNATSHKWALGAFAELLDNSLDEVCNGATYVNVDMLINKKDGSRMLLIEDNGGGMDPEKMRQCMSLGYSVKSKLANTIGQYGNGFKTSTMRLGADVIVFSRFPGKDGTSSTQSIGLLSYTFLRSTGKEDIVVPMLDYERRGQQWNKIIRTTLDDWNKNVETMVQWSPFSDEADLLRQFNLVKDHGTRVIIYNLWEDDQGQLELDFDADPHDIQIRGVNRDEKNIQMAKEFPNSRHFLTYRHSLRSYASILYLRLPSAFRIILRGEDILHHNIVNDMMMSQEVTYKPQAGVDGLLPKDSNMVAVVTIGFVKDAVHHVDVSGFNVYHKNRLIKMSFLTVISGSMIKNQYGLCHLVELFYLFVGSKNIVTILRIVFLIVSLSGGSGIQLEVEDVGSLVEPFLCVLEANFVEPAHDKQGFERTLVLSRLESKLIQMQKKYWGANSHKIGYSNRYKIQIRDSGDKDTSPAYVPEPSKSKRKYSTMDGKVTPLTSDKLYSQPNQKRMQKQTEKDSAFINGRSPVSPPKHIIQSSSEESSSDDDVSEDLLPKGKIQKASTAEKSKVQKTSTTEKSFENENGDTTSNRKASPYTRASASKIKGKDVNNSDLPLPDNDLLTAEELRKENRELKERLQRKEEEILELSQALQHDKDKCKSLETQLNESKKKIEELNGDQETLIDVFSEERERREAEEKNLRKKLQEASNTIQELLDKIRVLEKKSTSGKLER 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04341 867 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 156 347 IPR036890 -
Vimu11g04341 867 MobiDBLite consensus disorder prediction 711 731 - -
Vimu11g04341 867 MobiDBLite consensus disorder prediction 1 15 - -
Vimu11g04341 867 MobiDBLite consensus disorder prediction 627 645 - -
Vimu11g04341 867 Coils Coil 755 813 - -
Vimu11g04341 867 MobiDBLite consensus disorder prediction 601 756 - -
Vimu11g04341 867 Gene3D - 141 343 IPR036890 -
Vimu11g04341 867 Coils Coil 818 859 - -
Vimu11g04341 867 MobiDBLite consensus disorder prediction 1 60 - -
Vimu11g04341 867 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 156 259 - -
Vimu11g04341 867 FunFam MORC family CW-type zinc finger protein 4 140 344 - -
Vimu11g04341 867 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 58 840 IPR045261 GO:0016887
Vimu11g04341 867 Pfam Morc6 ribosomal protein S5 domain 2-like 386 486 IPR041006 -
Vimu11g04341 867 Pfam Morc6 ribosomal protein S5 domain 2-like 544 582 IPR041006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04341 Vimu-Chr11 64732259 64756394 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04341 - - gmx:100816702 1111.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04341 11 64732259 64756394 Vimu11g04341 11 64732259 64756394 ECH