LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g04311	ATGGGCAAGGAGAGCCAAGTGTCTGCTATGGAAATCGACACTCCGAAACCGGATAGTTCCGATCAGATCGTTCCCAAATTCTCCGTTAACGTGCTGCAATTGTTGAAATCGGCTCAAATGCAGCATGGCTTGCGCCACGGAGATTACACTCGTTATAGGAGGTATTGCACAGCTCGTTTGAGGAGGTTGTATAAATCGCTGAAGTTTACCCATGGTCGTGGCAAATATGCTAAAAGGACCATAACTGAATCCACTGTCTCTGAAGTAAGGTTTCTTCATCTAATTCTGTATACAGCAGAGAGAGCTTGGAGTCATGCCATGGAGAAAAGGCAGCTTCCAAATGGTCCAAATGCAAGTCAACGTATATATTTGATTGGTAGGTTGCGGAAAGCGGTAAAATGGGCCACTTTGTTTTCACAATTGTGTGCTGTCAAGGCAGATTCTAGAACATCTTTGGAAGCTGAGGCTTATGAGTCCTATATGAAAGGGAGTTTGTTGTTTGAGCAAGATCAGAATTGGGACGTGGCTTTAAAGAACTTCAAAAGTGCTAGGTACGTTGATTCTGCTTCCACGATTCATCCATATTGCCTTGAAGAAAAGATAAATAGATACTCTTTGCTCACACTACTTAAGATTTTAACCATCTCCTTATTTAATAGGGCTGTATATGAGGAATTAGGGAAATATGGAGATCTGGATAACCAAGTTTTGTGTCGTGAACGAGTTGAGGAGCTAGAACCTAGTATCCGATACTGCCTTCACAAAATTGGCCAGTCAAATCTACAGGCCTCTGAACTTTTACAAATTGGTGACGTGGAAGGTCCTGCACTAGACCTTTTTAAAGCAAAACTAGAGGCTGTAATGGCTGAGGCAAGATCTCAACAAGCTGCTTCCATGACAGAATTCCTGTGGCTTGGCCACAGATTTCCTATATCAAATGCCAAAACAAGGGTTTCCATCCTGAAAGGTTGGTTGCTTTCTTCCCCTACAGATAAGAGTCTTGTAATTTGGAAGCAAAATTACACGTTGCTTTGTCCCATCTCTTCTTCCATTCTACAAAATGGCATTACTACCCTGCGGGAGATTCTTTCCATTTTGTTGTGTTCTTTCATCTTGTGCTGTGGTGAAGTTATTGCACTGTTGCCCACACTAGATGGGCTTTCTCCCAATGAGTTGGAGAAAGATATACATGGTCCATCGGCAGACTCAATTCCAGCAGACAAAAGACTAGTTATTTTTGACAAAATCTTTTCTGCATATCATGAAGCCCGAGGCTATATTCGGGCTGATTTGGCCACTACAGGAAGTGCAGAAAGTGTGAAAGATGATTTGAATGGTCTGGATAAGGCTGTGAGTGCTGTACTTGGAGAAAGAACCATTGAACGCAACCTATTGTTGGTTAAGGTTGCAAAAAGCAAACTAGCAAAGCGGCATGATGATAAAAATGAAAAAGTCACCAAACCTGAAGAGCTTGTTCGCTTATATGATCTCTTGCTACAGAATACAGCTGATCTATCCGATTTAGTGAGTTCTGGAAGGGATAAAAAACCAGAAGAAGTTAGCTTTGCTGAAGTGTGTTCATGCAAAAGTTTGGCTTTTCGAGCTCAGAGTGTGGCTGGGATGAGGGCTGAAGCATATGCATTGTACTGCCGTGCTCGCAATTTGGCTGATGATACTTTAAAAAAGTTTCAAATGTTAGATGGTGATAATAAGACTATGATTAAAGAGTTGGAGGACTTGTGCAACGAGTGCCGATCTAACACTTGTATTGAGCATGCGTTGGGGATCATAGAGGAAACAAAGACTCAAGAGAATCTATCTGAAAAGGTCTCCAATATATCATTGACCGGAACTGAGCGGTTGGAGAAATTCCTTCTTGAGAAACTTGAAGTTTATGAGTCTGCTGTGGGTGATTCAAATGTGAAGTGTACACCACGCATTACAGGCTTCCCTCCATCTTTCGAGGCAATTTCACGAAATCCTATTGTGCTGGATCTGGCTTATAACATGATTGAATTCCCATCTATTGAAAATAGGATGAAGAAGGATAGAAAAGCCAAAGGCGGCTTTATCAGTAGAATATTTGGATAG	2091	0.417	MGKESQVSAMEIDTPKPDSSDQIVPKFSVNVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYAKRTITESTVSEVRFLHLILYTAERAWSHAMEKRQLPNGPNASQRIYLIGRLRKAVKWATLFSQLCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKNFKSARYVDSASTIHPYCLEEKINRYSLLTLLKILTISLFNRAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSNLQASELLQIGDVEGPALDLFKAKLEAVMAEARSQQAASMTEFLWLGHRFPISNAKTRVSILKGWLLSSPTDKSLVIWKQNYTLLCPISSSILQNGITTLREILSILLCSFILCCGEVIALLPTLDGLSPNELEKDIHGPSADSIPADKRLVIFDKIFSAYHEARGYIRADLATTGSAESVKDDLNGLDKAVSAVLGERTIERNLLLVKVAKSKLAKRHDDKNEKVTKPEELVRLYDLLLQNTADLSDLVSSGRDKKPEEVSFAEVCSCKSLAFRAQSVAGMRAEAYALYCRARNLADDTLKKFQMLDGDNKTMIKELEDLCNECRSNTCIEHALGIIEETKTQENLSEKVSNISLTGTERLEKFLLEKLEVYESAVGDSNVKCTPRITGFPPSFEAISRNPIVLDLAYNMIEFPSIENRMKKDRKAKGGFISRIFG	696

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g04311	696	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vimu11g04311	696	PANTHER	SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN	22	185	IPR026258	GO:0005047\|GO:0005786\|GO:0006614\|GO:0008312\|GO:0030942
	Vimu11g04311	696	Gene3D	-	26	258	IPR038253	GO:0003723
	Vimu11g04311	696	CDD	SRP68-RBD	30	254	IPR034652	GO:0003723
	Vimu11g04311	696	Pfam	RNA-binding signal recognition particle 68	220	322	IPR026258	GO:0005047\|GO:0005786\|GO:0006614\|GO:0008312\|GO:0030942
	Vimu11g04311	696	Pfam	RNA-binding signal recognition particle 68	390	671	IPR026258	GO:0005047\|GO:0005786\|GO:0006614\|GO:0008312\|GO:0030942
	Vimu11g04311	696	Pfam	RNA-binding signal recognition particle 68	44	186	IPR026258	GO:0005047\|GO:0005786\|GO:0006614\|GO:0008312\|GO:0030942
	Vimu11g04311	696	PIRSF	SRP68	214	330	IPR026258	GO:0005047\|GO:0005786\|GO:0006614\|GO:0008312\|GO:0030942
	Vimu11g04311	696	PIRSF	SRP68	27	189	IPR026258	GO:0005047\|GO:0005786\|GO:0006614\|GO:0008312\|GO:0030942
	Vimu11g04311	696	PIRSF	SRP68	398	689	IPR026258	GO:0005047\|GO:0005786\|GO:0006614\|GO:0008312\|GO:0030942
	Vimu11g04311	696	FunFam	Signal recognition particle subunit SRP68	26	204	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g04311	Vimu-Chr11	64461451	64470230	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g04311	K03107		-	gmx:100816486	550.051

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu11g04311	11	64461451	64470230	Vimu11g04311	11	64461451	64470230	ECH