Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04295 ATGGAAGCCATGAACGTGACGACGAGGGTTAGAGAAGAAGTGCGTCTTGAAGATGATAGCACTCAAACTGAACTCCAAAAAATCCGTCTCTTGAGGGCAATGGTTGAAACGCGAGATCCCTCTGCTAAGGAAGAAGATGATTTTACGATTAGAAGATTCCTACGTGCTCGTGATTTAGATTTGGAGAAGGCTTCTACAATGTTCCTCAAGTACTTGAAATGGAGACATTCGTTTCCAAATGGTTCTGTATCCGTATCAGAAGTTCGCAATGAACTTGCTCAAGAGAAGGTGTTCATGCAAGGAAAGGACAAGATAGGTCGACCTATAGCTGTTGTAGTCGGTAGAAAACATTTTCAGAACAAAGACGGTGGAGATGAATTCAAACGTGTTATTCCACCTGGTCAAGAAAAGTTTGCTGCTATAGCTGAACTTAAGGGATGGGGATACTCAAACAGTGACGTTCGTGGATACCTTGGTGCTCTATCAGTTTTGCAGGATTACTACCCGGAAAGATTGGGGAAGTTGTTTATTGTCAATGCACCATACATATTTATGAAAGTGTGGCAAATTATTTACCCTTTCATTGACAACAAAACCAAGAAGAAGATTGTATTTGTGGATAAAAGCAAGGTGAAATCAACACTGCTAGAAGACATTGATGAAAGTAATATACCAGAGATATTTGGTGGGCCACTGCCATTAGTCCGACTTCAGGATATCTAA 723 0.408 MEAMNVTTRVREEVRLEDDSTQTELQKIRLLRAMVETRDPSAKEEDDFTIRRFLRARDLDLEKASTMFLKYLKWRHSFPNGSVSVSEVRNELAQEKVFMQGKDKIGRPIAVVVGRKHFQNKDGGDEFKRVIPPGQEKFAAIAELKGWGYSNSDVRGYLGALSVLQDYYPERLGKLFIVNAPYIFMKVWQIIYPFIDNKTKKKIVFVDKSKVKSTLLEDIDESNIPEIFGGPLPLVRLQDI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04295 240 SMART CRAL_TRIO_N_2 46 71 IPR011074 -
Vimu11g04295 240 SUPERFAMILY CRAL/TRIO N-terminal domain 18 80 IPR036273 -
Vimu11g04295 240 SMART sec14_4 91 233 IPR001251 -
Vimu11g04295 240 Gene3D - 17 237 IPR036865 -
Vimu11g04295 240 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 85 236 IPR001251 -
Vimu11g04295 240 SUPERFAMILY CRAL/TRIO domain 87 233 IPR036865 -
Vimu11g04295 240 CDD SEC14 97 230 IPR001251 -
Vimu11g04295 240 Pfam CRAL/TRIO domain 132 230 IPR001251 -
Vimu11g04295 240 PANTHER OS03G0850700 PROTEIN 18 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04295 Vimu-Chr11 64310469 64314127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04295 52 226 Acyl Lipid Metabolism Gene Families AT1G55840 29.353 1.43e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04295 - - gmx:548015 369.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04295 11 64310469 64314127 Vimu11g04295 11 64310469 64314127 ECH