Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04282 ATGGGAGAACGGAAGCGAATTCCTCTCGCGATCTTTGCCGTGCTCTTCTTGATTTCTGCCTCTTCTTTTCCGCTTCTCCGCGCTTCGGACGACGCAGATGATGCTATCTTCTACGAGTCATTCGATGAGGATTTTGAAGATCGTTGGATCGTGTCTCAGAAAGATGAATACAGTGGTGTCTGGAAACATGCCAAGAGTGAGGGACACGATGATTATGGTCTTCTTGTCAGTGAGAAAGCGAGGAAATATGCCATAGTGAAAGAACTTGAAGAGGCAGTGGGTCTCAAGGAGGGAACTGTTGTTCTCCAGTTTGAAACTCGGCTTCAGAATGGCCTCGAATGTGGTGGAGCTTATCTAAAATATCTCCGACCACAGGATGCTGGATGGAAACCTAAGGAATTTGACAACGAATCTCCGTATTCTATCATGTTTGGTCCTGATAAGTGTGGGGCCACAAACAAAGTACACTTCATTTTCAAACACAAGAATCCCAAGAGTGGGGAGTATGTTGAGCACCATCTTAAGCATCCCCCTTCTGTCCCTTCTGATAAATTGTCTCATGTTTACACGGCTATTTTGACACCTGACAATGAGGTGCAAGTTTTGATAGATGGGGAACAGAAGAAGAAGGCAAACTTCTTAAGTGGTGATGATTTTGAGCCTCCTCTTATCCCTCCCAAGACAATCCCAGATCCTGAGGATAAGAAGCCGGAGGACTGGGATGAGAGAGAGAAAATTCCAGACCCAAGTGCGGTAAAGCCAGACGACTGGGATGAGGATGCACCCTTGGAAATTGTTGATGAAGAAGCTGAAAAACCTGAAGGATGGTTAGACGATGAACCTGAGGAGATAGATGATCCAGAGGCAACAAAACCAGAAGATTGGGACGATGAGGAGGATGGTGAGTGGGAGGCCCCAAAGATTGAGAACCCAAAATGCGAAGCCGCCCCAGGCTGTGGTGAGTGGAAGAGGCCAATGAAGAGGAATCCTGCTTATAAGGGAAAATGGCATGCCCCACTTATTGAAAATCCTGCTTATAAGGGTATATGGAAGCCTAGGGATATTCCAAACCCTGCTTACTTTGAACTAAAAAAACCTGATTTTGAGCCAATCGCTGCTATTGGTATCGAGATTTGGACAATGCAAGATGGCATTTTGTTTGACAACATCTTGATAGCCAAAGATGATAAAATTGCTGAGTCGTATCGGGAGACTACTTGGAAACCCAAGTTTTCAGTTGAAAAAGAAAAACAGAAGGCAGAGGAAGCTGCAGCTGGATCGAGTGGTCTTGCTGGTTTCCAGAAGAAGGTATTTGACCTCTTATATAAGATCGCAGACATTCCCTTCCTGAGTGCCTATAAGCCTAAAATCCTTGATCTCATCGAGAAAGGTGAAGAGCAACCCAATCTCACTGTTGGCATTCTTGTAGCCATTTTGGTTGTCTTCGTGTCAATTTTCTTCAGGATCATATTTGGTGGGAAGAAGCAGCCCACAAGGGTGGAGAAGACAAACTTAGAACCCGCAGAAAGTGCTTCTAACCAAAAAAATGGTGAGAATGAAGAAAACAAAGAGAAGGAGGAATCGTCTGCCCCTCCACGTCGTAGGTCAACAAGGAGAGAGAATTGA 1626 0.4508 MGERKRIPLAIFAVLFLISASSFPLLRASDDADDAIFYESFDEDFEDRWIVSQKDEYSGVWKHAKSEGHDDYGLLVSEKARKYAIVKELEEAVGLKEGTVVLQFETRLQNGLECGGAYLKYLRPQDAGWKPKEFDNESPYSIMFGPDKCGATNKVHFIFKHKNPKSGEYVEHHLKHPPSVPSDKLSHVYTAILTPDNEVQVLIDGEQKKKANFLSGDDFEPPLIPPKTIPDPEDKKPEDWDEREKIPDPSAVKPDDWDEDAPLEIVDEEAEKPEGWLDDEPEEIDDPEATKPEDWDDEEDGEWEAPKIENPKCEAAPGCGEWKRPMKRNPAYKGKWHAPLIENPAYKGIWKPRDIPNPAYFELKKPDFEPIAAIGIEIWTMQDGILFDNILIAKDDKIAESYRETTWKPKFSVEKEKQKAEEAAAGSSGLAGFQKKVFDLLYKIADIPFLSAYKPKILDLIEKGEEQPNLTVGILVAILVVFVSIFFRIIFGGKKQPTRVEKTNLEPAESASNQKNGENEENKEKEESSAPPRRRSTRREN 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04282 541 ProSitePatterns Calreticulin family repeated motif signature. 284 296 IPR018124 GO:0005509
Vimu11g04282 541 MobiDBLite consensus disorder prediction 500 541 - -
Vimu11g04282 541 FunFam Calnexin homolog 37 217 - -
Vimu11g04282 541 Gene3D Calreticulin/calnexin, P domain 222 366 IPR009033 GO:0005509|GO:0005515
Vimu11g04282 541 SUPERFAMILY P-domain of calnexin/calreticulin 222 362 IPR009033 GO:0005509|GO:0005515
Vimu11g04282 541 MobiDBLite consensus disorder prediction 212 321 - -
Vimu11g04282 541 ProSitePatterns Calreticulin family signature 2. 142 150 IPR018124 GO:0005509
Vimu11g04282 541 PRINTS Calreticulin signature 138 154 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu11g04282 541 PRINTS Calreticulin signature 109 127 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu11g04282 541 PRINTS Calreticulin signature 341 360 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu11g04282 541 PRINTS Calreticulin signature 284 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu11g04282 541 PRINTS Calreticulin signature 373 393 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu11g04282 541 PRINTS Calreticulin signature 236 249 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu11g04282 541 MobiDBLite consensus disorder prediction 516 541 - -
Vimu11g04282 541 Gene3D - 37 402 - -
Vimu11g04282 541 Pfam Calreticulin family 37 392 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu11g04282 541 SUPERFAMILY Concanavalin A-like lectins/glucanases 34 258 IPR013320 -
Vimu11g04282 541 PANTHER CALRETICULIN AND CALNEXIN 19 527 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Vimu11g04282 541 Coils Coil 508 528 - -
Vimu11g04282 541 ProSitePatterns Calreticulin family signature 1. 107 122 IPR018124 GO:0005509
Vimu11g04282 541 MobiDBLite consensus disorder prediction 229 259 - -
Vimu11g04282 541 MobiDBLite consensus disorder prediction 260 304 - -
Vimu11g04282 541 FunFam Calnexin homolog 222 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04282 Vimu-Chr11 64230374 64233735 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g04282 4 541 Miscellaneous Gene Families AT5G61790 75.696 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04282 K08054 - gmx:100785901 902.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04282 11 64230374 64233735 Vimu11g04282 11 64230374 64233735 ECH