Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04205 ATGGGAAATGCAGAGTCAAGTGATTCTCATGCTGATTTTCACCAGCGACCCCGTTCCTCTGATGGAAGTTCAGCAAATACTAACCACCAATATCATCAAACCCCTTCCTTCGTTGGAAGTTCAGCAAATGCTAGTCATCAATATCATGACCACCCTTCCTATGATGAAAGTTCAATGAATACTAGCTATCAATATCATCAACCGGTTCAACCCTCTTTATATGCTGGGAGTTTAGTGAATACCAAACATCAGCATAAGCAGCAACCCACATATATAGCTGACAATTTCAGTTCATTGGATCAGGTTGTTTCCGCTTTGAGAGAAGCTGGTTTGGAGTCTTCGAATCTTATAATTGGTATTGACTTCACCAAAAGCAATGAGTGGACAGGAAAATATTCTTTCAACCATAAAAGCCTTCATTATATTGGAAACACTCCTAATCCATATGAGCAAGCGATCTCTATTATTGGCCGTACTCTCTCTTCGTTTGATGAAGACAATCTGATCCCATGTTTTGGATTTGGTGATGCATATACACATGATCAGAATGTGTTCAGCTTTTATCCTGATGATCGCTATTGTCACGGTTTTGAGGAAGTACTTGCACGCTACCGAGAGATTGTGCCACACTTAAAATTGGCAGTGATACGAATTCTGACAGTTATCTCCTTGTGCATAGGTCCAACATCATTTGCCCCTGTAATCGATGCAGCAGTTGATATTGTGGAAAGAAGCAATGGTCAATACCATGTTCTTGTCATTATTGCTGATGGACAGGTTACCAGAAATTCAGGCACACCACATGGAAAGTTTAGTCCACAGGAACAAGCAACTATTAATTCCATTATTGCTGCAAGTCACTATCCCCTCTCAATTATTTTGGTTGGAGTTGGAGATGGTCCATGGGATGAAATGAAGCACTTCGATGATAGCATTGCTCAGCGCTTATTTGACAACTTTCAGTTTGTGAATTTCACAAAGATCATGTCTGAAAACAAAGATGCATCAAAGAAGGAAGCAGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAATACCGGATAACCCAAAACCTTCAACTGGCCAATGAAAAGTCAATTAGCCATCAACGTAAAAGGCCTTTTCCTCCGCCTAAGGAAGTAATAGATCGAGACAATGCAGTTCTAGCAGTTCCAAAATTTGAATCAGTTGAGCCATCAGCTCCAGCTACGGTAGAATCAGCATGCCCTATTTGCTTAACCAATCCGAAGGACATGGCTTTTGGATGCGGTCATACAACTTGCAAGGAGTGTGGCGTGTCATTGTCTTCTTGCCCTATGTGCCGGCAGCCAATTACAACTCGCCTGAGACTATTCACTTGA 1365 0.4147 MGNAESSDSHADFHQRPRSSDGSSANTNHQYHQTPSFVGSSANASHQYHDHPSYDESSMNTSYQYHQPVQPSLYAGSLVNTKHQHKQQPTYIADNFSSLDQVVSALREAGLESSNLIIGIDFTKSNEWTGKYSFNHKSLHYIGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDAYTHDQNVFSFYPDDRYCHGFEEVLARYREIVPHLKLAVIRILTVISLCIGPTSFAPVIDAAVDIVERSNGQYHVLVIIADGQVTRNSGTPHGKFSPQEQATINSIIAASHYPLSIILVGVGDGPWDEMKHFDDSIAQRLFDNFQFVNFTKIMSENKDASKKEAAFALAALMEIPIQYRITQNLQLANEKSISHQRKRPFPPPKEVIDRDNAVLAVPKFESVEPSAPATVESACPICLTNPKDMAFGCGHTTCKECGVSLSSCPMCRQPITTRLRLFT 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04205 454 ProSiteProfiles Zinc finger RING-type profile. 410 443 IPR001841 -
Vimu11g04205 454 Pfam Zinc finger, C3HC4 type (RING finger) 407 448 - -
Vimu11g04205 454 SMART ring_2 410 442 IPR001841 -
Vimu11g04205 454 MobiDBLite consensus disorder prediction 18 61 - -
Vimu11g04205 454 Pfam Copine 138 363 IPR010734 -
Vimu11g04205 454 PANTHER COPINE FAMILY PROTEIN 1 14 431 - -
Vimu11g04205 454 MobiDBLite consensus disorder prediction 1 61 - -
Vimu11g04205 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 454 IPR013083 -
Vimu11g04205 454 SUPERFAMILY vWA-like 114 309 IPR036465 -
Vimu11g04205 454 SUPERFAMILY RING/U-box 409 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04205 Vimu-Chr11 63567572 63577619 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04205 K16280 - gmx:100791316 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04205 11 63567572 63577619 Vimu11g04205 11 63567572 63577619 ECH