Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04197 ATGCCTTCCTCTTTGGGGAATGCGTTCTTTTTGGTGGGTCACCGAGTCTTGGACACGAGAAGGAGTAATGGTTGTTTATTCCGGAAGAATCGGAGATGGGTCGGAGCATCCATTTCGTGTTCTGGTGTTAGGAACGATTTGCCTTCTATTGAACAGCTTAGTGATGCACGGGTTATATACTCCGTCGCTGCATCTATGGGACACAACCAGGAGGCTCATCCAGAATCACATTTTCGAGTTCCTGCAATTGTGAATGCTTTAGAAGAAATGCAGCTCTCTTCAAAGTTCCGTGGCTCTGAGTTAATTGAACTTCAAAATTTTGAGCCTGCTTCAGTAGATGATATTGCAAGTGTTCATGCAAGAGCCTATGTTTCTGGACTTGAAAAGGTGATATTAAATTCTATCCTAAATCCATTATTGGCCCCAGTATTTGCCCATGTTCTTATATCTGGTCTTGGAAAACCGAACGGTAGTAGACTTCTGGATCCGAACGTGAGAGAACGGGCAGAACCTAGAGAAAGAGGGCTTGCCGAGCCGAACGGTAAGGTACTATGGGAACCAATCGGTAGCCGACTGATGGATTCGAACGTGAGGGGACTGCCGGAACCGAACGATAGCAGACCGACAGATTCAAACGGGAGGGGACTGCTGAAACCGAACGATAGCGGACTGACGGAACCGAACGGTAGCGGACTGATGGATTCGATCATGAGAGAACGGGCGGAACCTAAAGAAAGAGGACCTACCGAGCCGAACGGGAGAGGATGGTCGGAACTGAACGTGAGAAAACTATCGGAACCGAATGGGCTAGTAATGGAAGGAAGAATGGAGGTGTTGGAAGGAAGGGCAGATGGAAGAATCAATGCCCTGGAGAGAACAAAGAATTCATTGAAGTGGTGGGCCATCGAAAAGAACAGGGGGCTTGTTATGGATCAAGCTGTGGAGAAGGGCCTTATTTTCGTTGAAGGTTCAGGACCAACATATGCCACTGCCACTACCTTTCAGGAGTCAATAATTGCAGCTGGTGCTGGATTAGCCTTAGTGGACTCAGTGGTTGCAGGTTCAAAGATAAAGAGTGATGCACCCACTGGTTTTGCTCTGATAAGACCTCCAGGACATCATGCTGTTCCACAAGGACCTATGGGATTCTGCATTTTCAGCAATGTGGCCATTGCAGCCCGTCATGCTCAGCGTGTTCATGGACTGAAGCGGGTGTTTATTATTGATTTTGATGTTCATCACGGGAATGGAACAAATGATGCTTTCTATAATGATCCAGATGTATTTTTCCTTTCGTTTCATCAAGATGGAAGCTACCCAGGCACCGGTAAATTTAATGAAGTGGGAAGTGGGGATGGTGAAGGAACCACATTAAATCTGCCTCTTCCTGGAGGCTCAGGTGATACTGCTGTTAGAACCGTGTTCGATGAAGTTATTGTACCATGTGCCCAAAGATTTAAACCAGACATCATTCTTGTTTCTGCTGGGTATGACGGGCACGTGTTGGATCCACTCGCTAATCTTCAATATACAACTGGAACATATTACATGCTAGCATCCAGTATCAAGCAACTAGCGAGGGATTTATGTGGGGGACGGTGTGTGTTTTTCTTGGAGGGAGGATATAATCTGAAGTCTCTGTCATATTCAGTGGCAGACACATTCCGTGCTCTTCTTGGTGATAGAAGCTTGGCATCTGAATTTGATGACCCTAACATTTTGTACGAAGAGCCATCTACAAAAGTTAAGCAAGCAATTCAGAGGATAAAACACATTCATTCCCTTTGA 1788 0.4597 MPSSLGNAFFLVGHRVLDTRRSNGCLFRKNRRWVGASISCSGVRNDLPSIEQLSDARVIYSVAASMGHNQEAHPESHFRVPAIVNALEEMQLSSKFRGSELIELQNFEPASVDDIASVHARAYVSGLEKVILNSILNPLLAPVFAHVLISGLGKPNGSRLLDPNVRERAEPRERGLAEPNGKVLWEPIGSRLMDSNVRGLPEPNDSRPTDSNGRGLLKPNDSGLTEPNGSGLMDSIMRERAEPKERGPTEPNGRGWSELNVRKLSEPNGLVMEGRMEVLEGRADGRINALERTKNSLKWWAIEKNRGLVMDQAVEKGLIFVEGSGPTYATATTFQESIIAAGAGLALVDSVVAGSKIKSDAPTGFALIRPPGHHAVPQGPMGFCIFSNVAIAARHAQRVHGLKRVFIIDFDVHHGNGTNDAFYNDPDVFFLSFHQDGSYPGTGKFNEVGSGDGEGTTLNLPLPGGSGDTAVRTVFDEVIVPCAQRFKPDIILVSAGYDGHVLDPLANLQYTTGTYYMLASSIKQLARDLCGGRCVFFLEGGYNLKSLSYSVADTFRALLGDRSLASEFDDPNILYEEPSTKVKQAIQRIKHIHSL 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04197 595 Gene3D Histone deacetylase domain 46 145 IPR037138 -
Vimu11g04197 595 PANTHER HISTONE DEACETYLASE 2-RELATED 47 561 - -
Vimu11g04197 595 PRINTS Histone deacetylase superfamily signature 488 498 IPR000286 -
Vimu11g04197 595 PRINTS Histone deacetylase superfamily signature 404 419 IPR000286 -
Vimu11g04197 595 PRINTS Histone deacetylase superfamily signature 370 393 IPR000286 -
Vimu11g04197 595 CDD HDAC_classII 324 559 - -
Vimu11g04197 595 Pfam Histone deacetylase domain 73 557 IPR023801 -
Vimu11g04197 595 SUPERFAMILY Arginase/deacetylase 58 562 IPR023696 -
Vimu11g04197 595 MobiDBLite consensus disorder prediction 161 178 - -
Vimu11g04197 595 MobiDBLite consensus disorder prediction 158 178 - -
Vimu11g04197 595 Gene3D Histone deacetylase domain 302 594 IPR037138 -
Vimu11g04197 595 MobiDBLite consensus disorder prediction 205 229 - -
Vimu11g04197 595 MobiDBLite consensus disorder prediction 194 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04197 Vimu-Chr11 63511003 63520510 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04197 - - gmx:100788664 561.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04197 11 63511003 63520510 Vimu11g04197 11 63511003 63520510 ECH