Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04178 ATGCTGAGTTACATCAACAACATCATTCGCTACTATTTTCAGTTTATCTTCTACCTAATGCGGGAGGAGCACCCCTTATTGGCAGAGAAACCTGTGTTAGTCCAGCCATGCTTGGATCAAAGCCATGGCCAGGACAAAACCAACACCGAGGTTGGAGTGTTATCCAAAACAACCACATCGGAAAAATCTCACGACTTTTGCAACCACTCTGAGTCCTTCAAGACGCTTGTGGAGATGGGTCTGCCCTGTAATGAATCAGTGGAGGAAAAACTGCGTTGGTTGCGCTCCCAAATCATTGGTTGCCATGCAGAGTTTGATTCCCCATTTGGAAAAAGAAAAGTTCTCTATGCTGACCACACTGCTTCAGGTCGCAGCCTTCACTATAATGAGAATTTCATCATCAATCACGTTCTTCCTTTCTATGGTAACACGCACACATGCGACAGCTACGTTGGAAGCAGGACAACAAAAATGGTACACGAAGCAAGTGAGTACATTAAGAAATGTTTAGGGGGTGGGGAAGATGATGCACTTATATTATGTGGTTCGGGCACAACTGCAGCTATCAAGAGGCTGCAAGAAGTGATGGGGATCACTGTGCCATCTGTTATGAGGGAAAGGGTTTTGAAGAGTCTGAACACAGAAGAAAGATGGGTGGTTTTTGTCGGACCACATGAGCACCATTCAAACCTTCTTTCTTGGAGGCAAAGTTTGGCTGAGGTGGTAGAGATTGATCTTGATGACGAAGGATTGCTTGACATGGATGCTCTAAGGATACAAATTGAGGCCTACAAAGATACCAACAGGCCCATGTTGGGATCTTTTTCAGCTTGTAGCAATGTCACGGGAATCTACCTAGATACACGTGCAGTTGCTCAGCTTCTTCATCAGTACAAAGCCTTTGCATGCTTTGATTTTGCAGCAAGTGGTCCATACGTGGAGATTGACATGAGGTCTGGGGAAAGTGATGGGTATGATGCAGTGTTCCTAAGTCCACACAAGTTTCTTGGTGGTCCTGACTCTCCTGGGGTTCTCCTCATGAACAAGGCCCTTTATCTGCTAGGATCTTCACCACCGTCAACTTGTGGAGGTGGAACTGTGACTTATGTCAATGGCTTCAACGAACAGGAAACATTATACCTGGAGAACATAGAGGAAAGGGAAAGTGGGGGCACGCCTCCAATAATCCAGACAGTGAGAGCAGCATTGGCATTTTGGGTGAAAGAATACATAAGCTGTGAAGAGATTGAAAAAAGTGAACAAATGTACATCAACAAGGCACTAAAGAGGCTAAGCTCAAACCCCAACATTGAGGTTCTAGGAAACTTGAAGGCCAAGAGACAAGCTATATTGTCGTTTCTGATTTACTCCACCAGCAATTGCTCCTCAGCAGGTGAATGGAGTGATGAAGGGGAACTTGATCTGTGGGCAGAAACAGGGAACCAAAGAGGGAAACCACTTCATGGCCCTTTCGTTGCAGCATTGCTCAATGACCTCTTTGGAATCCAAGCTCGTGGAGGGTGTGCTTGTGCTGGACCTTATGGCCACGAATTGCTCCACATCAACAGGTCACAGTCACTTGCCATTAGATCAGCAGTTGAAAAGGGTTACATTGGAGTAAAACCAGGGTGGACTAGAGTTAGTTTTCCTTACTACATGAATGAAGAGGATTTTGAGTACATCCTGAAAGCCATAGAATTTTTAGCTGTGTATGGCCAACGGTTCTTTCCCCTTTATAGCTTTAATTTGATAAATGGGAGCTGGAGATTGAAGACAGAGAAAGTTGAGGCACTAACCATTGAAGAAAACTGCAACTTTGGCGGTCATAGAAGGAACGAATCAAACTTTGAGGTAGCTAAATGCATTGCTACTCGCCTTCCAAAATTCCCTTCTCCGGGAATAATCAAGGAGGAACTCCATCCAGATATCTTCTGCTTCAAAGTTTGA 1947 0.4479 MLSYINNIIRYYFQFIFYLMREEHPLLAEKPVLVQPCLDQSHGQDKTNTEVGVLSKTTTSEKSHDFCNHSESFKTLVEMGLPCNESVEEKLRWLRSQIIGCHAEFDSPFGKRKVLYADHTASGRSLHYNENFIINHVLPFYGNTHTCDSYVGSRTTKMVHEASEYIKKCLGGGEDDALILCGSGTTAAIKRLQEVMGITVPSVMRERVLKSLNTEERWVVFVGPHEHHSNLLSWRQSLAEVVEIDLDDEGLLDMDALRIQIEAYKDTNRPMLGSFSACSNVTGIYLDTRAVAQLLHQYKAFACFDFAASGPYVEIDMRSGESDGYDAVFLSPHKFLGGPDSPGVLLMNKALYLLGSSPPSTCGGGTVTYVNGFNEQETLYLENIEERESGGTPPIIQTVRAALAFWVKEYISCEEIEKSEQMYINKALKRLSSNPNIEVLGNLKAKRQAILSFLIYSTSNCSSAGEWSDEGELDLWAETGNQRGKPLHGPFVAALLNDLFGIQARGGCACAGPYGHELLHINRSQSLAIRSAVEKGYIGVKPGWTRVSFPYYMNEEDFEYILKAIEFLAVYGQRFFPLYSFNLINGSWRLKTEKVEALTIEENCNFGGHRRNESNFEVAKCIATRLPKFPSPGIIKEELHPDIFCFKV 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04178 648 Gene3D Aspartate Aminotransferase, domain 1 389 571 IPR015422 GO:0003824
Vimu11g04178 648 Gene3D - 133 359 IPR015421 GO:0003824
Vimu11g04178 648 PANTHER CYSTEINE DESULFURASE 78 574 - -
Vimu11g04178 648 Pfam Aminotransferase class-V 140 558 IPR000192 -
Vimu11g04178 648 SUPERFAMILY PLP-dependent transferases 107 566 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04178 Vimu-Chr11 63366930 63370056 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04178 - - gmx:100778947 1105.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04178 11 63366930 63370056 Vimu11g04178 11 63366930 63370056 ECH