Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04158 ATGGACGCGGGGCTGAAGACGGCGTATCGGAACGCGAAAGCGGCATACGAAAACGCGAAAGACGAGGGAAACCACCGGGAGGAGGCGCGGTGGGCCAACGTCATCGGCGACATACTGAAAAACCGTGGAGATTACTGCGATGCTCTAAAATGGCTCCGAATTGATTACGAAATTTCGCTCAAACATTTACCGGAGAAGCACTTGCTCCCAACCTGCCAATCCCTCGGCGAAGTGTACTTCCGCCTAGAAGATTTCAAAAACGCCCTAATTTTCCAGAAAAAGCACCTCGAGCTCGCCAGAGATGCAAACGACATCGTTGAGCAGCAGCGAGCGAGCACGCAACTCGGGCGGACTTACCACGAATTGTTCACGCGATCGGATCACGACCACAATTCGATTCGCAACGCGAAGAAGTACTTTAAGTGCGCGATGGATCTCGCGGTGAAGCTCAAGGAGAATCCTCCGAACAGCAAGTCTTCTTTTCTGAAGGAGTACATCGACGCGCACAACAACATAGGCATGCTTGAAATTGATCTTGACAACTTGCACGATGCGCGGAAGATTTTAACTACTGGATTGGAGATTTGTGATGAAGAGGAGGTCGCTGAATTCGATGATGGCCGCAGTAGGCTCCATCACAACCTTGGGAATGTGTATATGGAGCTTAGGCTTTGGGATGAAGCTAGGAAAAATATCAAGAGGGATATCGTGATTTGTAACAGAATTGGACACTGTCAAGGGGAGGCCAAGGGGTATATTAATCTTGGTGAAATGCATTACCGGACTCAGAGGTACGATGATGCAAGGGCTTATTACGATAAGGCGCTTGGTTTGGCGAAGTCCTTGGAGGATGAAGATGCCTTGGTTAAGCAAATTGAGCAGAACATTGAAACTGTGAGAGAAGCTGTTAAGGTAATGGCTGATATAACGAAAGAAGAGCAAAGCCTAAAAAAGCTTAAGAGAGATATAGCCGCAGCTAGAGGTACATCGCATGAGCGGAAATTCTTGCTGCAGCAGAATGCAGTAGTTGAACGCCTTGTTGAGAAGGCAAGGACGATCTCTGCGTGGGAGAAGCATTGTGAATTTGCAAAGGAGAAGAAGAAAATAGCAAGTGAACTCTGTGATAGGCAGAGGCTGGCTGATTCATATTTGGATGTTGCAGAATCATACCAAAAACTGAGAAAATTCAACAAAGCTATCAAATGGTACAAAAAGAGCTGGCAAATGTACAAAAATATTGGTAACTTAGAGGGGCAAGCGCTGGTGAAAATTAACATTGGTAATGTTTTGGATTCTACAAGCAATTGGAGAGATGCACTGGATGCGTTTCAAGAGAGTTATAGTATTGCTGTTGAAGCAGATCTGCCTGATGTGCAACTCTCTGCCTTGGAAAATATGCATTATAGCAACATGATAAGATTTGATGATGAGGATGAGACCAGGAGGTTGAAACTTCTAATTGATAAACTGAAGAAATCCAAAGAAAAAGAGGCAGCAGCAAAAAATTTGTCAGAGGATTGTTGCTCTGAAACTGATACTGAAGCAGACGATTATCTGTCTAACAGTGGTTCTGATAATATTTACTTTCCAAAGACAATTTCTCGATCAAAAGCTCCAACTACTGGAGAAGAATTGGAAGACGACGCACCACTTATGTCCCTATATCAGTCCATAAAAAGCTCATCCAAAAATAAAACAGCCTACAAAGAAAGTCTTCTTAACTCTACCAAGCAAGCAGAGCAGTCACCCAGTAGTCTGAAAAATCAACCCATTGATCATCAGACAATTGTTAGTCGAAAACGTCCGCATGTGATTCTTTCTGATGATGATGATGACGATGACGTTGAAGTGAAAAGTTCAAGCAAAAGAGATCATGATTGCCTGGTAGATGATTTGCCCACTTATAATGCAAGTATGTTTTCTTTGTTGCTTCTTTGCCCTGATGCAAATATTCCATTGTACCAAGAATATATTCTGATTGATGGTGTCCTGATTGCAGTTAAGAGTAAAGTCAGTCCTTGTAAAATTCAGGTTATCTCCGAGCATGGATCTAAAAGTGCAACTAATGTTGAAGAAAGTAGTACTTCTTTCAAATGTTCAAGTCCATATACAACCACAAAAACTGGCAGACATTCTAGGTCTTTGAGCAATGATGTATTTGCCGAAGCCAATTTCCGTACTGGTTCTAAATGTGACACTGATTTCTCTGGCAAACAAAATGATATTTCCCAGCCCAGGTTGCGTCATCCCCAAAATGACTCCCAGAAATGTATTACATGTCGGATTGGGAATGATATAATACACGTTGAAGCAACCTTGTGTACCACCGGTGATCAGTTGAACATTGACTCTTTGAAGGCTGTAGTTGCATGCTTATATTATCTACAATTTCCGTCGGAAAAGAGATCAGAGGGTTTGTTGCCCATTATTGAGCATATGAAATGTGCTGGAAGAAATATGGAATCCCTGGAAACTGTTGAACATCTTAAAGAAGTTATGGGAAATGACATGGTTGAAGCTTCTGTTGATGGATGGATTCACAAGCGCTTGATAAAAATGTACGTAGATTGCTGCAAGGAGTTGTCTGAGGTACCAAACATTAAGGTACTGACGAAGCTTTACAATTTAGAGGTTTCAGATGACGAAATTGTTGTGTCTGATTGTGACCTGCAAGATTTGTCAATTACACCATTGATCAATGCACTGCATTCCCAAAAGTCATTTGCGATGCTGGACCTCTCTCACAATTTGTTAGGAAATGGAACAATCGAAAAACTTCAAAAAGTGTTCACAGCATCGGGACAATCTTATGGTGGCTTAACTCTGGATTTGCATTGTAATCGTTTTGGCCCGACAACGTTGTTTCAGATTTGCGAGTGTTCACTGCTATTTGCTAGACTAGAAGTTCTGAACATATCTGGAAACCGCCTTACTGATGCATGTGGATCATATCTTTCGACAATCTTAAAAAACTGTACAGCGCTTTGTAGCTTGAACATAGAGAACTGTTGTGTCACATCCAGAACTATTCAAAAAGTAGCAGATGCATTGGACTCCAGATCTGCCCTTTCCCATCTATGTATAGGATACAACAGTCCTGTATCTGGAAATGCTATAGTTAATCTTCTGTCCAAGCTTTCCACTCTGAAAAGGTTTTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAAACCAGTTGTCGATACCCTTTGTAAGCTTGCAGGGAGCTTAACTTTATCAGGACTAATGCTTGGAGGCACGGGCATTGGAACTTTTGCCTTGCCCACATGGTCTACTGATGATAGAGGCAATACTCTGCAGGAAGGGGTGAAAAAATTAGTAGATTCTTTGCTCAAAGGGAATGAAGAACTTGTGAAGCTTGACCTATCATATTGTGGTCTAACATGTAACTTTGTTTCAAACACCAGTGTTAATTTCTTTTGTTCAATCCTAGAGCTAAACCTGGAAGGAAATCCTATCATGCATGAGGGCAGCGATACTTTATTTTCACTTCTCGTTAACCCCCAGTGCTGTCTCAAAGTTTTGGTTCTTAGAAAGTGTCAACTTGGGCTTACTGGAATCCTTCACATAATTGAGGCTCTTGCAGAGAACAGCTGCATCGAAGAACTTAATATTGCTGATAATTCTGTTCCAAAGGAATATTCCGCTCTACAATATGATTTATCAGTAAAAAGCTGCACACAAAACCAGGAGCAGAAACTAGATACTATGCAAGTTGATGATAATCAAGAGATCCTTTGCTCTTTAAACGCAGCCAACTACAAGCTGGAAGTTGCTGATAGTGAAGATATTCCTCTGGAAGCTGCTGCTTCTGGAATTGACGACAGCTGTGCCAGTTCGTGTCAAAGAAATTCATCTCCCGAGTGCCATTTGACGGAACAGTTTGCAATTGCTATTGGTAAGGCAAAGAACTTGCAATTACTAGACCTTAGCAATAATGGTTTTTCTGCACAAGCTGCTGAAACATTCTATGGCTCGTGGGCGACTTTACGATCCCTTTCAAGTCAGAAGCACATTACCGAGCAGATTGTTCATTTCTCTACAAGGGAAAATAAATGCTGCAGAGTGAAACCCTGCTGCAAGAAAGCTTGA 4113 0.4199 MDAGLKTAYRNAKAAYENAKDEGNHREEARWANVIGDILKNRGDYCDALKWLRIDYEISLKHLPEKHLLPTCQSLGEVYFRLEDFKNALIFQKKHLELARDANDIVEQQRASTQLGRTYHELFTRSDHDHNSIRNAKKYFKCAMDLAVKLKENPPNSKSSFLKEYIDAHNNIGMLEIDLDNLHDARKILTTGLEICDEEEVAEFDDGRSRLHHNLGNVYMELRLWDEARKNIKRDIVICNRIGHCQGEAKGYINLGEMHYRTQRYDDARAYYDKALGLAKSLEDEDALVKQIEQNIETVREAVKVMADITKEEQSLKKLKRDIAAARGTSHERKFLLQQNAVVERLVEKARTISAWEKHCEFAKEKKKIASELCDRQRLADSYLDVAESYQKLRKFNKAIKWYKKSWQMYKNIGNLEGQALVKINIGNVLDSTSNWRDALDAFQESYSIAVEADLPDVQLSALENMHYSNMIRFDDEDETRRLKLLIDKLKKSKEKEAAAKNLSEDCCSETDTEADDYLSNSGSDNIYFPKTISRSKAPTTGEELEDDAPLMSLYQSIKSSSKNKTAYKESLLNSTKQAEQSPSSLKNQPIDHQTIVSRKRPHVILSDDDDDDDVEVKSSSKRDHDCLVDDLPTYNASMFSLLLLCPDANIPLYQEYILIDGVLIAVKSKVSPCKIQVISEHGSKSATNVEESSTSFKCSSPYTTTKTGRHSRSLSNDVFAEANFRTGSKCDTDFSGKQNDISQPRLRHPQNDSQKCITCRIGNDIIHVEATLCTTGDQLNIDSLKAVVACLYYLQFPSEKRSEGLLPIIEHMKCAGRNMESLETVEHLKEVMGNDMVEASVDGWIHKRLIKMYVDCCKELSEVPNIKVLTKLYNLEVSDDEIVVSDCDLQDLSITPLINALHSQKSFAMLDLSHNLLGNGTIEKLQKVFTASGQSYGGLTLDLHCNRFGPTTLFQICECSLLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLNIENCCVTSRTIQKVADALDSRSALSHLCIGYNSPVSGNAIVNLLSKLSTLKRFSELNMSGLKLGKPVVDTLCKLAGSLTLSGLMLGGTGIGTFALPTWSTDDRGNTLQEGVKKLVDSLLKGNEELVKLDLSYCGLTCNFVSNTSVNFFCSILELNLEGNPIMHEGSDTLFSLLVNPQCCLKVLVLRKCQLGLTGILHIIEALAENSCIEELNIADNSVPKEYSALQYDLSVKSCTQNQEQKLDTMQVDDNQEILCSLNAANYKLEVADSEDIPLEAAASGIDDSCASSCQRNSSPECHLTEQFAIAIGKAKNLQLLDLSNNGFSAQAAETFYGSWATLRSLSSQKHITEQIVHFSTRENKCCRVKPCCKKA 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04158 1370 Coils Coil 282 329 - -
Vimu11g04158 1370 MobiDBLite consensus disorder prediction 569 618 - -
Vimu11g04158 1370 MobiDBLite consensus disorder prediction 569 593 - -
Vimu11g04158 1370 ProSiteProfiles TPR repeat profile. 249 282 IPR019734 GO:0005515
Vimu11g04158 1370 SUPERFAMILY TPR-like 8 200 IPR011990 GO:0005515
Vimu11g04158 1370 Gene3D Tetratricopeptide repeat domain 3 311 IPR011990 GO:0005515
Vimu11g04158 1370 Gene3D Tetratricopeptide repeat domain 312 472 IPR011990 GO:0005515
Vimu11g04158 1370 SUPERFAMILY TPR-like 165 449 IPR011990 GO:0005515
Vimu11g04158 1370 SMART tpr_5 69 102 IPR019734 GO:0005515
Vimu11g04158 1370 SMART tpr_5 249 282 IPR019734 GO:0005515
Vimu11g04158 1370 SMART tpr_5 166 199 IPR019734 GO:0005515
Vimu11g04158 1370 SMART tpr_5 420 453 IPR019734 GO:0005515
Vimu11g04158 1370 SMART tpr_5 380 413 IPR019734 GO:0005515
Vimu11g04158 1370 SMART tpr_5 209 242 IPR019734 GO:0005515
Vimu11g04158 1370 MobiDBLite consensus disorder prediction 501 521 - -
Vimu11g04158 1370 FunFam tonsoku-like protein 313 473 - -
Vimu11g04158 1370 Pfam Tetratricopeptide repeat 209 280 - -
Vimu11g04158 1370 Pfam Tetratricopeptide repeat 380 450 - -
Vimu11g04158 1370 Gene3D Ribonuclease Inhibitor 1099 1352 IPR032675 -
Vimu11g04158 1370 Gene3D Ribonuclease Inhibitor 857 1098 IPR032675 -
Vimu11g04158 1370 SMART LRR_RI_2 1176 1203 - -
Vimu11g04158 1370 SMART LRR_RI_2 1147 1174 - -
Vimu11g04158 1370 SMART LRR_RI_2 905 932 - -
Vimu11g04158 1370 SMART LRR_RI_2 992 1019 - -
Vimu11g04158 1370 SMART LRR_RI_2 964 991 - -
Vimu11g04158 1370 SMART LRR_RI_2 1309 1339 - -
Vimu11g04158 1370 PANTHER PROTEIN TONSOKU 8 1369 IPR044227 GO:0005634|GO:0006325|GO:0009933|GO:0040029|GO:0072423
Vimu11g04158 1370 ProSiteProfiles TPR repeat profile. 380 413 IPR019734 GO:0005515
Vimu11g04158 1370 MobiDBLite consensus disorder prediction 594 608 - -
Vimu11g04158 1370 FunFam Protein TONSOKU 857 1245 - -
Vimu11g04158 1370 SUPERFAMILY RNI-like 872 1341 - -
Vimu11g04158 1370 FunFam Protein TONSOKU 6 158 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04158 - - gmx:100805682 2218.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04158 11 63148263 63159302 Vimu11g04158 11 63148263 63159302 ECH