Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03967 TTAGATTCTTCAAAAAGCACAAAAACCATGTCAGAGAATTTGTTACAATTTGTGAAATGGCTTGTGATTTCAACAATACTGATGCAGAGTAATGTGATTTGTGGAAGAGAAAGCCATTTCAGAGCAATTTTCAACTTCGGAGACTCCAATTCTGACACCGGTGGTCTCTCGGCGGCGTTCGGACAAGCTCCTCCTCCCAACGGAATCACGTTTTTCCACTCTCCAAAAGGACGATTCTCCGATGGCCGCCTCATAATCGATTTTATAGCGCAGAGCTTGGGCTTGCCTTATCTCAGTGCTTACTTGGACTCGGTGGGGTCCAATTTCAGCCACGGAGCGAATTTCGCCACCGCGGGATCCACCGTCAGACCTCAGAACACAACTAAGTCTCAGAGCGGATACAGTCCTATTTCCCTAGATGTGCAGTTTGTGCAATTCTCCGATTTCAAAACCAGATCCAAATTGGTTCGCCAACAAGGAGGGGTGTTTAAGGAGTTATTGCCCAAGGAGGAGTATTTTTCTGAGGCTCTATACACCTTTGATATTGGCCAAAATGATATCACAGCTGGCTACAAACTCAACTTGACCACAGAACAAGTCAAGGCCTATATTCCTGATGTACTGGGCCAGTTCTCCAGAGTTATAAAGGGTGTGTATGGCAAAGGTGGGAGGTCGTTTTGGATACACAACACAGGCCCTTTGGGATGCTTGCCATACATGCTGGATCGCTATCCCATGAGCCCAGCCCAAATGGACGAGTTTGGGTGTGCCAAACCATTCAATGAGGTGGCCCAATATTTTAATAAAAGATTAAAAGAAACTGTTGGGAAACTGAGGGAAGAATTGCCAGAGGCTAAGATCACCTATGTTGATGTGTATAGGGTGAAGTACACCCTCATCAGCCATGCTAAAAAATATGGTTTTGAGAAGGGGGTGATAGCATGCTGTGGACACGGTGGGAAATACAACTTCAATAATAGAGAGAGATGTGGAGCAAGCAAGAGAAAGAATGGGAGAGAGGTTATGATAGCCAAATCTTGCAAAGATCCAAGTGTGAGGATCATTTGGGATGGAATCCATTACACCGAAGCTGCTAATAATTGGATCTTTCTGCAGATAGTCAATGGCTCATTTTCAGATCCACCTACATCATTAGGAGTTACAAATTCACGTTCTAGGAAGACTGAATTTTGA 1194 0.4447 LDSSKSTKTMSENLLQFVKWLVISTILMQSNVICGRESHFRAIFNFGDSNSDTGGLSAAFGQAPPPNGITFFHSPKGRFSDGRLIIDFIAQSLGLPYLSAYLDSVGSNFSHGANFATAGSTVRPQNTTKSQSGYSPISLDVQFVQFSDFKTRSKLVRQQGGVFKELLPKEEYFSEALYTFDIGQNDITAGYKLNLTTEQVKAYIPDVLGQFSRVIKGVYGKGGRSFWIHNTGPLGCLPYMLDRYPMSPAQMDEFGCAKPFNEVAQYFNKRLKETVGKLREELPEAKITYVDVYRVKYTLISHAKKYGFEKGVIACCGHGGKYNFNNRERCGASKRKNGREVMIAKSCKDPSVRIIWDGIHYTEAANNWIFLQIVNGSFSDPPTSLGVTNSRSRKTEF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03967 397 Coils Coil 268 288 - -
Vimu11g03967 397 Gene3D SGNH hydrolase 31 377 IPR036514 -
Vimu11g03967 397 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 31 382 - -
Vimu11g03967 397 CDD SGNH_plant_lipase_like 42 377 IPR035669 -
Vimu11g03967 397 Pfam GDSL-like Lipase/Acylhydrolase 43 370 IPR001087 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03967 Vimu-Chr11 61523844 61526190 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03967 42 385 Acyl Lipid Metabolism Gene Families AT4G10950 30.362 1.47e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03967 - - var:108335696 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03967 11 61523844 61526190 Vimu11g03967 11 61523844 61526190 ECH