Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03952 ATGGAAAGCTTTTTGCTCATTAATATTCTCTCTGTGCTAATAATATTCTTCTCCGGAGGAGGAGGAGGCATAGTTGATGTTAGGCCCGTGGCAGCGACGGCTCTCCCCCTCCGCACGGATTCTCGATGGATCGTGGGCCAAGATGGGCGAAGGGTAAAGCTCGCGTGTGTGAATTGGGTTTCCCACGTGGAAGCTGTGGTGGCTGAAGGGCTCAGCAAAAAGCCCGTCGATGACATTTCCCAGGGAATAAAGTCTATGGGCTTCAACTGTGTCAGACTCACTTGGCCCATACTTTTGGTCACAAACGACTCTCTGGCTTCTCTCACCGTTCGACGCTCCTTTCAGAACCTCGGCCTCCTTGATTCCGTCGCCGGCGTCCAAACCAACAACCCCTCCATCATTGACCTTCCGCTCATCCAAGCTTTTCAGGTAACTTTTTTTTTCAATTTTTTATTATTCTATTATTTTCTCTTAACGTAA 480 0.4875 MESFLLINILSVLIIFFSGGGGGIVDVRPVAATALPLRTDSRWIVGQDGRRVKLACVNWVSHVEAVVAEGLSKKPVDDISQGIKSMGFNCVRLTWPILLVTNDSLASLTVRRSFQNLGLLDSVAGVQTNNPSIIDLPLIQAFQVTFFFNFLLFYYFLLT 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03952 159 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 17 144 - -
Vimu11g03952 159 Gene3D Glycosidases 34 143 - -
Vimu11g03952 159 SUPERFAMILY (Trans)glycosidases 35 140 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03952 Vimu-Chr11 61417429 61417908 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03952 34 143 Glycoside Hydrolase AT3G26140 62.162 5.94e-45 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03952 - - vun:114177138 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03952 11 61417429 61417908 Vimu11g03952 11 61417429 61417908 ECH