Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03427 ATGTCTATAACCTATAACCTCACTACTTCACTCTCTTCTACTTCTTCTGCTTTCTTAGCTCCATCTTCTTTCAATTCTAGGGGTCATGTTTCATTGCCTGTGAAGAGCGTGGGCATTTGCAAATGCATTGCGACACCCGAGGCTGAGACTGGCTACAAGACAAAGGTCACTCGTAATCCAAATTTGGGGAAACTTCAAGCTGGCTATCTATTTCCTGAGAAAAAGAATTTGAGAGTTATCATCTTGGCTGAAGATGAGGAATTGGGGGACTTGATGGATGAAAAATCAAATGAGATTGCTAGGAGAAGGTCTGCACACTTGCTGAAGTACCCTGATGCTAAAGTTATAAGCCTTGGAATTGGTGACACTACTGAGCCTATTCCTGAAGTCATAACTGATGCAATGTCGAAGAGATCACAAGGATTATCAACTGTTAAAGGATATAGTGGGTATGGTGCGGAACAAGGTGAAAAGCCATTAAGAAGTGCAATTGCTTCAACATTTTACAGCGATCTTGGCATAGAAGAGGATGATATATTTGTGTCAGATGGAGCAAAGTGTGATATATCTCGTCTCCAGATTGTCTTCGGGTCAAATGTAAAAATGGCTGTACAAGACCCTTCATACCCGGCCTATGTAGACTCAAGTGTAATTATGGGCCAGACTGGCCTCTACCAGAAGGATGTTGAGAAGTTTGCAAACATTGAATACATGAGGTGTAGTCCGGAAAATGGTTTCTTCCCTGATTTATCTTCAATTTCTCGACCAGACATAATCTTTTTCTGTTCGCCAAACAATCCTACTGGTGCTGCAGCAACAAGGGAACAACTGACCCAACTTGTTCAGTTTGCTAAGGACAACGGTAGTATAGTAATCCATGATTCAGCTTATGCAATGTATATTTCCGGTGACAACCCACGTTCCATCTTTGAAATTCCTGGAGCCAAGGAGGTTGCCATTGAGACATCATCATTCAGCAAGTATGCTGGGTTCACAGGAGTCCGATTAGGTTGGACTGTGATTCCAAAGGAGTTGCTGTTTTCTGATGGATTTCCTGTTGCCAGGGACTTCAACCGTATTGTATGCACTTGCTTCAATGGTGCATCAAATATTTCCCAGGCAGGTGGTCTGGCTTGCCTTTCACCAGAAGGTCTTAAGGCTATGGGAGAAGTTATTGGATTCTACAAAGAAAATACAAACATAATTGTGGAGACATTTGATTCTCTTGGATTCAAAGTGTATGGAGGGAAAGATGCACCATATGTGTGGGTTCATTTCCCTGGCAGAAGCTCATGGGATGTATTTGGTGAGATTCTTGAGAAGACTCATGTGGTTACAACTCCTGGTAGTGGTTTTGGACCTGGTGGTGAAGGTTTTGTCAGAGTTAGTGCCTTTGGTCACAGGGAAAACGTCTTGGAGGCATGCAGAAGGTTCAAGCAGCTATACAAGTGA 1452 0.4277 MSITYNLTTSLSSTSSAFLAPSSFNSRGHVSLPVKSVGICKCIATPEAETGYKTKVTRNPNLGKLQAGYLFPEKKNLRVIILAEDEELGDLMDEKSNEIARRRSAHLLKYPDAKVISLGIGDTTEPIPEVITDAMSKRSQGLSTVKGYSGYGAEQGEKPLRSAIASTFYSDLGIEEDDIFVSDGAKCDISRLQIVFGSNVKMAVQDPSYPAYVDSSVIMGQTGLYQKDVEKFANIEYMRCSPENGFFPDLSSISRPDIIFFCSPNNPTGAAATREQLTQLVQFAKDNGSIVIHDSAYAMYISGDNPRSIFEIPGAKEVAIETSSFSKYAGFTGVRLGWTVIPKELLFSDGFPVARDFNRIVCTCFNGASNISQAGGLACLSPEGLKAMGEVIGFYKENTNIIVETFDSLGFKVYGGKDAPYVWVHFPGRSSWDVFGEILEKTHVVTTPGSGFGPGGEGFVRVSAFGHRENVLEACRRFKQLYK 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03427 483 PANTHER AMINOTRANSFERASE 7 483 IPR019942 GO:0008483
Vimu11g03427 483 CDD AAT_like 116 480 - -
Vimu11g03427 483 NCBIfam LL-diaminopimelate aminotransferase 98 480 IPR019942 GO:0008483
Vimu11g03427 483 FunFam LL-diaminopimelate aminotransferase, chloroplastic 368 479 - -
Vimu11g03427 483 FunFam LL-diaminopimelate aminotransferase, chloroplastic 125 382 - -
Vimu11g03427 483 Pfam Aminotransferase class I and II 114 478 IPR004839 GO:0009058|GO:0030170
Vimu11g03427 483 Gene3D - 125 382 IPR015421 GO:0003824
Vimu11g03427 483 Gene3D Aspartate Aminotransferase, domain 1 97 479 IPR015422 GO:0003824
Vimu11g03427 483 SUPERFAMILY PLP-dependent transferases 101 478 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03427 Vimu-Chr11 55457578 55467601 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03427 K10206 - gmx:100801405 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03427 11 55457578 55467601 Vimu11g03427 11 55457578 55467601 ECH