Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03426 ATGGAAGATTACAATTTTTTTGTTGGTCAAGAGTTCCCAGATGTGAAGGCATTTCGGAGTGCAATTAAAGAAGCTGCCATTGCACAGCATTTTGAGCTTCGTACTATTAAAAGTGATCTGATTCGCTACTTTGCCAAGTGTGCCTCAGATGGTTGTCCATGGCGGATTCGTGCTGTCAAGCTCCCTAATGCCCCAACATTTACTATTAGAAGTATTGATGGCACACATACTTGTGGGAGGAATGCAAACAATGGGCACCATCAGGCTTCTGTTGACTGGATTGTGAGTTTCATTGAAGAAAGATTGCGAGACAATATTAATTATAAACCAAAGGATATTTTACATGACATCCATAAACAATATGGTATAACTATACCTTATAAGCAAGCTTGGCGTGCAAAGGAGCGGGGTCTTGCAGCTATATATGGATCTTCTGAAGAAGGATATTACCTACTTCCTTCATACTGTGAAGAAATTAAGAAAACAAATCCTGGAAGTATTGCAGAGGTGTTTACCGCTGGTGAAGATAACCGTTTTCAGAGACTTTTTGTTTGCTTTCGTGCATCAATCTATGGTTTTTTTAATGGTTGCTTGCCAATTGTTGGACTTGGTGGAATCCAGCTGAAAAGCAAATACCTTAGCACATTGCTTTCAGCAACTTCTTTTGATGCTGACGGTGGATTGTTTCCTCTTGCTTTTGGTGTTGTTGATGTAGAAAATGATGATAGCTGGACATGGTTCCTGTCTGAGTTGCATAGGGTTCTGGAGGGGAATACTGAATGCATGCCAGAGTTTATATTTTTATCAGATGGGCAACAGGGTATTACGGATACAGTGAGAAGTAAGTTCCCAAGTTCTTCTCATGCATTCTGCATGCGTCACTTGGCTGAAAGCATTAGTAAAGAGTTCAAGAACTCTAGGCTTGTCCATCTTCTGTGGAAGGCTGCATATGCCACCACAACCATTGCATTTAAAGAAAAAATTGCTGAAATAGAGGAGGTATCTCCTGAAGCTGCTAAATGGTTACAACATTTTGATCCTTCTCAGTGGGCCCTTGTGCATTTTAAAGGGACACGATTTGGCCATCTATCCTCTAACATTGATGAGTTCACCAAATGGATTCTTGATGCTCGAGAATTGCCAATTATCCAGGTGATGGAGCGGATTCATAGCAAGCTTAAAACTGAGTTTGATGACAGGCGGATAAAAAGCAGCTCATGGTGCTCTGTACTCGCCCCTTCTGCTGAGAAGCTAATGAATGAAGCCATCAACCGTGCATCTATATATCAAGTCCTTAGATCAGATGAAGTAGAATTTGAGGTTCTTTCAGCTGATCGATCGGACATTGTAAATATTGGCAGCTATAGTTGTTCCTGCCGCGACTGGCAGCTAAACGGTATTCCTTGTTCCCATGCTGCCGCTGCTCTTATCTCATGTCGGAAGGATGTCTATGCATTTACCCACAAGAGTTTTACTGTAGCAAGTTACAGGAATACCTATGCAGAGAGTATACAGTACATCCCAGCAAAACTTGAATGGAGTAAAACAGACAAGTCTTCTATGGATGATAATATCCTAGTTGTACGGCCACCAAAATTACGGCGACCACCGGGACGCCCTGAGAAAAGGATGTGTGTGGATGAGCTTAGTCGTGAGAAACATACAGTGCACTGTAGTCGGTGCAACCAAACTGGACATTACAAGAGAACCTGTAAAGCAGAAATGATTAATAGTATAGAGCAGTTTTAA 1749 0.4162 MEDYNFFVGQEFPDVKAFRSAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKLPNAPTFTIRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYKQAWRAKERGLAAIYGSSEEGYYLLPSYCEEIKKTNPGSIAEVFTAGEDNRFQRLFVCFRASIYGFFNGCLPIVGLGGIQLKSKYLSTLLSATSFDADGGLFPLAFGVVDVENDDSWTWFLSELHRVLEGNTECMPEFIFLSDGQQGITDTVRSKFPSSSHAFCMRHLAESISKEFKNSRLVHLLWKAAYATTTIAFKEKIAEIEEVSPEAAKWLQHFDPSQWALVHFKGTRFGHLSSNIDEFTKWILDARELPIIQVMERIHSKLKTEFDDRRIKSSSWCSVLAPSAEKLMNEAINRASIYQVLRSDEVEFEVLSADRSDIVNIGSYSCSCRDWQLNGIPCSHAAAALISCRKDVYAFTHKSFTVASYRNTYAESIQYIPAKLEWSKTDKSSMDDNILVVRPPKLRRPPGRPEKRMCVDELSREKHTVHCSRCNQTGHYKRTCKAEMINSIEQF 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03426 582 Pfam MULE transposase domain 209 296 IPR018289 -
Vimu11g03426 582 Pfam MuDR family transposase 6 69 IPR004332 -
Vimu11g03426 582 PANTHER POLYPROTEIN, PUTATIVE-RELATED 10 542 - -
Vimu11g03426 582 Pfam SWIM zinc finger 446 479 IPR007527 GO:0008270
Vimu11g03426 582 SMART 26again6 455 482 IPR006564 GO:0008270
Vimu11g03426 582 ProSiteProfiles Zinc finger SWIM-type profile. 439 480 IPR007527 GO:0008270
Vimu11g03426 582 ProSiteProfiles Zinc finger CCHC-type profile. 558 572 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03426 Vimu-Chr11 55452007 55456397 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03426 - - gmx:100800865 1083.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03426 11 55452007 55456397 Vimu11g03426 11 55452007 55456397 ECH