Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03420 ATGGAGGCACGTGCAGGAGCCAATCAGCGTATTGCAAGAATCTCTGCTCATCTTCAGCCTTCAAATTTCCAGGAAAAGGGCGATGTTATTCTCAAGAGAGCTGAGTGCAGAGCAAAGGGTGGGGCACCTGGATTCAAAGTGGCAATTTTGGGGGCTGCTGGGGGAATTGGTCAATCCCTTTCTTTGTTGATGAAGATTAACCCGTTGGTTTCAGTTCTTCATCTTTATGATGTTGTCAACACCCCCGGTGTCACAGCTGATATTAGCCACATGGACACTGGTGCTGTGGTTCGTGGCTTTCTGGGACAGCCACAACTGGAGAGTGCACTCACTGGCATGGACTTGGTAATCATACCTGCTGGGGTGCCAAGGAAACCTGGGATGACAAGGGATGATTTATTTAAAATAAATGCTGGAATTGTGAAGACCCTTAGTGAAGGAATTGCCAAGTCCTGCCCCAATGCAATTGTCAACTTGATCAGTAATCCCGTGAATTCCACTGTTGCTATTGCTGCAGAGGTTTTCAAGAGAGCCGGTACATATGACCCAAAGCGACTTCTGGGTGTTACAGCTCTTGACGTTGTGAGGGCAAATACTTTTGTGGCAGAGGTACTTGGAGTGGATCCAAGAGAGGTTGACGTTCCAGTGGTGGGAGGTCATGCTGGGGTCACTATTTTACCTCTTTTGTCACAGGTTAAGCCTCCCAGTAGCTTCACTGCAGAAGAAACTGAATACCTGACAAATCGCATTCAAAATGGTGGAACTGAAGTTGTGGAGGCAAAAGCTGGTGCTGGTTCGGCCACACTATCCATGGCATATGCAGCTGCCAAGTTTGCGGACGCATGCCTTCGTGGCTTAAAAGGAGAAGCTGGGGTGGTGGAGTGTGCTTTTGTTGATTCTCAGGTTACAGAACTTCCCTTCTTTGCAACGAAGGTACGACTCGGTCGTGCTGGAGCAGAAGAGGTATATCAATTAGGCCCCCTCAACGAGTATGAAAGGATTGGGTTGGAAAAAGCAAAGAAAGAGTTAGCAGGAAGCATCCAGAAGGAAACTGAGAAGGTTGATGATAGAATCTGTGGTCATATTTTTTCTCTAACCAATCGAATGAGATCTAACACCAATGGTCCACTCTTCTGTCACCCATCAGAACAAACTAATCTTCATAATCAGGGATAA 1176 0.4685 MEARAGANQRIARISAHLQPSNFQEKGDVILKRAECRAKGGAPGFKVAILGAAGGIGQSLSLLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVKTLSEGIAKSCPNAIVNLISNPVNSTVAIAAEVFKRAGTYDPKRLLGVTALDVVRANTFVAEVLGVDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTAEETEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLKGEAGVVECAFVDSQVTELPFFATKVRLGRAGAEEVYQLGPLNEYERIGLEKAKKELAGSIQKETEKVDDRICGHIFSLTNRMRSNTNGPLFCHPSEQTNLHNQG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03420 391 PANTHER MALATE AND LACTATE DEHYDROGENASE 27 351 - -
Vimu11g03420 391 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 190 353 IPR022383 GO:0016616
Vimu11g03420 391 SUPERFAMILY LDH C-terminal domain-like 189 350 IPR015955 GO:0003824|GO:0016616
Vimu11g03420 391 FunFam Malate dehydrogenase 43 189 - -
Vimu11g03420 391 Gene3D - 190 356 IPR015955 GO:0003824|GO:0016616
Vimu11g03420 391 NCBIfam malate dehydrogenase 46 354 IPR010097 GO:0006099|GO:0030060
Vimu11g03420 391 Pfam lactate/malate dehydrogenase, NAD binding domain 46 188 IPR001236 GO:0016491
Vimu11g03420 391 CDD MDH_glyoxysomal_mitochondrial 45 349 IPR010097 GO:0006099|GO:0030060
Vimu11g03420 391 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 188 IPR036291 -
Vimu11g03420 391 Gene3D - 37 189 - -
Vimu11g03420 391 FunFam Malate dehydrogenase 190 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03420 Vimu-Chr11 55413628 55417089 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03420 K00026 - gmx:100170735 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03420 11 55413628 55417089 Vimu11g03420 11 55413628 55417089 ECH