Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03414 ATGGCTTCCTCGGAGATCGAGGTGGTATCATCATCATCGTCGGTCTCCAAACCCAACGACCAGCCTCTAATCCTCGACGTCTTCACCGCCTCTGCTCACGGCGACTTCAACAAACTTAGAACCTTCGTCGAACAACACGGTGCCTCCGTCTCGGTTCCCGATGTTAATGGCTATTACGCTCTTCAATGGGCCTCGCTTAACAACTTTCATGACATTGCGCACTATCTCATTCAGCATGGAGCGGATGTGAATGCTAAAGACAGCATGCAACAAACAGCATTGCATTGGGCAGCAGTTCGTGGTTCAACTGCAGCTGCTGATGTGCTTGTGGAGAATGGTGCTCAGATTGGAGCTGCTGACATAAATGGATACCGGTTCAAAATTGCTCGAAATGTGACCACAAATGAAGTAGCAAATTCTTCCCGCTATGATTATCTTCGTGGACCTGATGGGCGATTCAGAAACCCATATAACCATGGTTGTTGGAAGAATTGTGCTGACTTCCTTTCTCTGGGATATACAAATGATGATGAAATTGCTTGGCCTCGATTACAGCAGGTGGCAACTTGA 570 0.4754 MASSEIEVVSSSSSVSKPNDQPLILDVFTASAHGDFNKLRTFVEQHGASVSVPDVNGYYALQWASLNNFHDIAHYLIQHGADVNAKDSMQQTALHWAAVRGSTAAADVLVENGAQIGAADINGYRFKIARNVTTNEVANSSRYDYLRGPDGRFRNPYNHGCWKNCADFLSLGYTNDDEIAWPRLQQVAT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03414 189 ProSiteProfiles Ankyrin repeat profile. 56 88 IPR002110 GO:0005515
Vimu11g03414 189 SMART ANK_2a 56 85 IPR002110 GO:0005515
Vimu11g03414 189 SMART ANK_2a 89 118 IPR002110 GO:0005515
Vimu11g03414 189 SUPERFAMILY Ankyrin repeat 28 124 IPR036770 -
Vimu11g03414 189 Gene3D - 3 130 IPR036770 -
Vimu11g03414 189 ProSiteProfiles Ankyrin repeat profile. 89 121 IPR002110 GO:0005515
Vimu11g03414 189 ProSiteProfiles Ankyrin repeat region circular profile. 89 120 - -
Vimu11g03414 189 Pfam Ankyrin repeats (3 copies) 30 119 IPR002110 GO:0005515
Vimu11g03414 189 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 6 124 - -
Vimu11g03414 189 FunFam S-acyltransferase 12 138 - -
Vimu11g03414 189 ProSiteProfiles Ankyrin repeat region circular profile. 56 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03414 Vimu-Chr11 55336137 55348600 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03414 9 123 Acyl Lipid Metabolism Gene Families AT5G53470 34.483 4.23e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03414 K20032 - gmx:100807263 212.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03414 11 55336137 55348600 Vimu11g03414 11 55336137 55348600 ECH