Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03251 ATGGCACTTTGGAAACAAAAGCTAGGCTTCTCATATCTACTAATCCTTTGCTTAGCCACTGTGGTTTCTTCACACAACAGACCTTTTACAGTTCCAACTGTCACACGGTTGACGGATTCTTTTCCTACTGTCCCAATTGATCAAGCTTTTTCTAAGGCCTTTGGGGCCTCCAATGTCCAGTTTCTAAGCAATGGGTCCACGGCCACACTGGCTCTCGACAAACTCTCAGGTTCCGGCTTGGTGTCACAAAGTAGATACTACTATGGATTCTTCAGTGCTGCAATCAAATTGCCCTCTGGTTTGTCACCTGGAGTTGTTGTTGCTTTTTATCTGTCTAATGCAGATAAATTCCCTCACAACCATGATGAAATAGACATTGAAATTTTGGGTCATGATAAAAGAAATGACTGGGTTATTCAAACGAATGTCTATGCCAATGGAAGTGTCAGCACAGGGAGAGAAGAGAAATTCTATTTCTGGTTCGACCCAACACAGCAGTATCATCTTTACAGCATCTTGTGGAACAGTTATCACACAGTGTTCTTAGTGGACAATGTTCCGGTGAGGGAATTCATACATAGCAACACAAATCCTTCTATTTATCCATCAAAACCAATGTCGGTGTATGCCACAATATGGGATGGTTCAGAATGGGCTACTCATGGAGGAAAATACCCAGTTAACTACAAGTATGGACCATTTGTTGCTTCATTTGCACAAGTAAAACTCAGTGGCTGTATATCTGATCCCACAGCACCAGTTTCTGCATGTTCTAAGGTCAATCCTTCAGCCCAAGACCCAGTCAATGGACCAGAGTTTACTAAGCTATCACAGCAGCAAGTAGCAGCTATGGATTGGGCAAGGAGGAAACTCATGTTTTACTCTTACTGCAATGACAGACCCAGATTCAAAGTCATGCCACCAGAATGCCACTAA 936 0.4274 MALWKQKLGFSYLLILCLATVVSSHNRPFTVPTVTRLTDSFPTVPIDQAFSKAFGASNVQFLSNGSTATLALDKLSGSGLVSQSRYYYGFFSAAIKLPSGLSPGVVVAFYLSNADKFPHNHDEIDIEILGHDKRNDWVIQTNVYANGSVSTGREEKFYFWFDPTQQYHLYSILWNSYHTVFLVDNVPVREFIHSNTNPSIYPSKPMSVYATIWDGSEWATHGGKYPVNYKYGPFVASFAQVKLSGCISDPTAPVSACSKVNPSAQDPVNGPEFTKLSQQQVAAMDWARRKLMFYSYCNDRPRFKVMPPECH 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03251 311 SUPERFAMILY Concanavalin A-like lectins/glucanases 49 310 IPR013320 -
Vimu11g03251 311 Pfam Glycosyl hydrolases family 16 49 230 IPR000757 GO:0004553|GO:0005975
Vimu11g03251 311 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 45 310 IPR044791 GO:0004553
Vimu11g03251 311 PIRSF EndGlu_transf 9 311 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu11g03251 311 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 39 238 IPR000757 GO:0004553|GO:0005975
Vimu11g03251 311 CDD GH16_XET 41 310 IPR016455 GO:0010411|GO:0016762|GO:0042546
Vimu11g03251 311 Gene3D - 31 310 - -
Vimu11g03251 311 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 274 310 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03251 Vimu-Chr11 52528419 52529781 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03251 13 311 Glycoside Hydrolase AT1G10550 62.376 4.65e-144 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03251 K08235 - gmx:100778993 585.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03251 11 52528419 52529781 Vimu11g03251 11 52528419 52529781 ECH