LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu11g03235	TTGGATCTGCCACAGGAGCAACAAATGGCCGGACAGACATACGAAGAAGCCATTGCAGCGTTGACCAAACTTATAAGCGAGAAAGCTGACCTGGGTGCCATTGCCGCCGCAAAAATAAAGCAGTTGACGACGGAGCTGACGAGCGATGCGTCGAAGCCATTTAACCCGGACGAGAGGATTCGAACCGGATTCGACCACTTCAAGAACGAGAAATTCCAGAAGAATCCAGAATTATATGGTGAACTTGCCAAAGGCCAGAGTCCTAAGTTTCTGGTGTTCGCTTGCTCAGATTCAAGAGTTTGCCCTTCCCATATTCTGGATTTCCAACCGGGTGAAGCTTTTGTTGTCCGAAATATAGCCAACATGGTTCCTCCCTATGACAAGACCAAGTATTCAGGAACAGGGGCGGCCATTGAATATGCAGTGCTGCATTTAAAGGTGGAGAATATTGTGGTCATTGGACACAGCTGCTGTGGAGGTATAAAGGGCCTCATGTCCATCCCAGATGATGGGACCACTGCAAGTGAATTCATAGAGAATTGGGTCCAAATTTGCACCCCGGCAAAGTCCAAGGTTAAAACTGAAGCTGGCACACTAGAATTCTCGGAGCAGTGTACCAACTGTGAGAAGGCAAGCAAATTTTATTTGGAAGCTGTAAATGTATCAGTTGGGAACCTTTTGACTTATCCATTTGTGAGAGATGGTGTTGTGAATAAAACGCTTGCTTTGAAAGGTGCACATTACAATTTCGTTAAGGGTACCTTTGAGCTGTGGGATCTGGACTTCAAAATCTCTAACTCTGTGTCTGTTTAA	813	0.4576	MDLPQEQQMAGQTYEEAIAALTKLISEKADLGAIAAAKIKQLTTELTSDASKPFNPDERIRTGFDHFKNEKFQKNPELYGELAKGQSPKFLVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDKTKYSGTGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASEFIENWVQICTPAKSKVKTEAGTLEFSEQCTNCEKASKFYLEAVNVSVGNLLTYPFVRDGVVNKTLALKGAHYNFVKGTFELWDLDFKISNSVSV	270

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu11g03235	270	CDD	beta_CA_cladeB	63	258	IPR045066	GO:0004089\|GO:0008270
	Vimu11g03235	270	Gene3D	Carbonic anhydrase	46	270	IPR036874	GO:0004089\|GO:0008270
	Vimu11g03235	270	SMART	Pro_CA_2	83	259	IPR001765	GO:0004089\|GO:0008270
	Vimu11g03235	270	Pfam	Carbonic anhydrase	91	254	IPR001765	GO:0004089\|GO:0008270
	Vimu11g03235	270	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 1.	95	102	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Vimu11g03235	270	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 2.	139	159	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Vimu11g03235	270	SUPERFAMILY	beta-carbonic anhydrase, cab	44	264	IPR036874	GO:0004089\|GO:0008270
	Vimu11g03235	270	PANTHER	CARBONIC ANHYDRASE	36	262	IPR001765	GO:0004089\|GO:0008270
	Vimu11g03235	270	FunFam	Carbonic anhydrase	45	270	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu11g03235	Vimu-Chr11	52272885	52277308	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu11g03235	K01673		-	gmx:100808326	466.077

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu7g03710	7	32400165	32403277	Vimu11g03235	11	52272885	52277308	PCT