Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03212 ATGAGTGCCTTGAGTTTCAGGGGCTTCACATACATGTTTCTCATTGTATTTCTCATTTGGTCTTCCAATTTTGAAGCCTGCATTGCAAGAAGAGGTAAGCACTGGAGACATAGCAGCAGGGATGCATCAACTGCTTTGTATAAGAAAAAAGGAAAAAGTTATGGAAATGGTCACAACAAAAACCATGGTGGAGGATCAAAACCAAAGCCTCCATCACATAAAGGCACCCCAACATTACCAAAGCCTCCACCTCATAAAAACATTCCCTCACCACCATCAAACGAAGATAACCCCACAACTCCCCCACCAAAACCTTACAATGGAGGCCATTCTTCCTCCACCGCCTTCAATGTGCTAGATTTCGGTGCCAAGGGAGATGGGAAAACTGATGACACAAAGGCATTTCAAGCAGCTTGGGCTGAAGCTTGCAAAGTAGAGGCATCAACCATGGTGGTTCCATCGGACTACGTCTTCTTTGTGGGGCCCATTTCATTCTCAGGCCCATACTGTAAACCCAACATCGTTTTCCAGCTTGATGGCACCATTGTTGCACCAACGAACCCCAATGCCTGGGGCAGAGGACTACTACAATGGTTAGAATTTACCAAGTTGGTGGGAATTACCATTCAAGGAAATGGTGTCATTGATGGAAAAGGCTCTGTGTGGTGGCAAGATAATCAATATGATGATCCTATAGATGATGAAGAAAAGCTCATAGTCCCTTTAAACCAGACAGTACCAAGTCCCCCACTGCCGATTCAAAGTGAGCTGGGAGGAAAAATGCCATCTGTCAAGCCAACTGCACTGCGCTTCTATGGGAGTTTTAACCCAACAGTTACAGGCATAACAATTGTAAATAGCCCACAATGCCACCTCAAGTTTGACAACTGCAATGGGGTCATGGTCCACAATGTTAGCATATCATCCCCCGGGAACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTACTGATATATGGCAGCACTATGGCATGCGGGCATGGAATCAGCATTGGAAGTCTAGGAAAGGATAACACCAGAGCCTGTGTTTCGAACATTACTGTCAGGGATGTCAACATGCACAACACAATGACTGGCGTCAGAATCAAAACATGGCAGGGTGGGTCAGGCTCTGCACAAGGAATACTATTCTCAAATATACAAGTCTCTGAAGTTCAATTCCCAATTGTGATCGATCAATTCTATTGCGATAAAAGAACCTGCAAAAACCAAACATCGGCTGTTTCTCTGGCTGGAATCAACTATGAAAGGATAAGGGGCACATACACAGTTATGCCAGTGCACTTTGCCTGCAGTGATAGCCTTCCTTGTGTAGATGTTTCTTTAACCTCTGTTGAGTTGAAACCAATTCAAGAACAAAACCATCTATATGATCCTTTCTGCTGGCAGACTTATGGTGAATTGAAAACTCCAACAGTCCCACCAATTGGTTGTCTACAGATTGGGAAGCCCACAAACAATCGGATTCAGACAGATCATGATTTATGTTGA 1524 0.4423 MSALSFRGFTYMFLIVFLIWSSNFEACIARRGKHWRHSSRDASTALYKKKGKSYGNGHNKNHGGGSKPKPPSHKGTPTLPKPPPHKNIPSPPSNEDNPTTPPPKPYNGGHSSSTAFNVLDFGAKGDGKTDDTKAFQAAWAEACKVEASTMVVPSDYVFFVGPISFSGPYCKPNIVFQLDGTIVAPTNPNAWGRGLLQWLEFTKLVGITIQGNGVIDGKGSVWWQDNQYDDPIDDEEKLIVPLNQTVPSPPLPIQSELGGKMPSVKPTALRFYGSFNPTVTGITIVNSPQCHLKFDNCNGVMVHNVSISSPGNSPNTDGIHLQNSKDVLIYGSTMACGHGISIGSLGKDNTRACVSNITVRDVNMHNTMTGVRIKTWQGGSGSAQGILFSNIQVSEVQFPIVIDQFYCDKRTCKNQTSAVSLAGINYERIRGTYTVMPVHFACSDSLPCVDVSLTSVELKPIQEQNHLYDPFCWQTYGELKTPTVPPIGCLQIGKPTNNRIQTDHDLC 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03212 507 MobiDBLite consensus disorder prediction 73 105 - -
Vimu11g03212 507 Gene3D - 107 496 IPR012334 -
Vimu11g03212 507 MobiDBLite consensus disorder prediction 49 111 - -
Vimu11g03212 507 PANTHER - 115 337 - -
Vimu11g03212 507 Pfam Pectate lyase superfamily protein 116 142 IPR024535 -
Vimu11g03212 507 Pfam Glycosyl hydrolases family 28 145 226 IPR000743 GO:0004650|GO:0005975
Vimu11g03212 507 Pfam Glycosyl hydrolases family 28 264 459 IPR000743 GO:0004650|GO:0005975
Vimu11g03212 507 SUPERFAMILY Pectin lyase-like 114 506 IPR011050 -
Vimu11g03212 507 ProSitePatterns Polygalacturonase active site. 331 344 IPR000743 GO:0004650|GO:0005975
Vimu11g03212 507 SMART pbh1 297 323 IPR006626 -
Vimu11g03212 507 SMART pbh1 383 404 IPR006626 -
Vimu11g03212 507 SMART pbh1 354 375 IPR006626 -
Vimu11g03212 507 SMART pbh1 324 344 IPR006626 -
Vimu11g03212 507 SMART pbh1 204 225 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03212 Vimu-Chr11 51878614 51883271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03212 2 507 Glycoside Hydrolase AT1G60590 60.370 0.0 628
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03212 - - gmx:732602 865.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03212 11 51878614 51883271 Vimu11g03212 11 51878614 51883271 ECH