Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03183 ATGGTGGTGGCTGCGGGCGCGAAGTTTAATTTGAGAAGAGATAATAGTTCTTCTCATAATGGTATCAACGGTTATAGCGGTGATGCGGAACTTTCCAGAATTAGCAGGGGTTGTTGTTTCACATCAGTGACAGAGGTGGACAGAGACCCTTCTTGCGTTTCATTCACCACTTTCAACATTCTGGCTCCGATTTACAAACGGACGGATCCTCAGAACCAAGGCATACGTGAAAGCAACTGCAGATCATTGTGGTTGTCCAGGAATGAGAGGATTCTCGATTGCTTGCTTTCTGAATCATCTTCCATTATGTGCCTCCAGGAATTTTGGGTTGGAAACGAAGAGCTTGTTCACATGTATGAGGAGAGACTTGGAGATGCTGGCTACAATCTCTTCAAGCTTGGTCGAACCAACAACCGTGGAGATGGTCTACTGACTGCTATACATAAAGAATTTCTAAGAGTTTTGGATTATCGAGAGTTGCTTTTCAACGATTGTGGCGATCGTGTTGCTCAATTGCTACACGTTCAGTCAGTTTCCCCCTCACAAAACCAAAAAGGGAGTGTTCCCCAAGAGTTTCTGATTGTGAACACACACTTGTTATTTCCTCACGATTCAAGTCTTTGTTTAGTGAGATTGAATCAGGTTTACCAAATATTGCAGTATGTGGAATTATATCAGAGAGAAAACAGGCTCAAACCCATGCCTATCATACTCTGTGGAGACTGGAATGGCAGCAAGCGTGGTCATGTTTACAAGTTCCTTAGGTCACAGGGGTTTGTATCATCGTATGATATTGCTAATCAATACAGTGACAGTTACGCAGATGCTCACAAGTGGGTTAGTCACCGAAATCATAGAGGAAATATCTGTGGTGTTGACTTCATTTGGCTTTGCAATCCCAACCAAGCACGTAAACCTTTGAAGACCAGTTGGGCTGAAGCTGTATTTAGTATACTAAAATTCCAGTTGCGAAAAGCATCAGAAAATGATGCATTTGCCTTTCTGAAGGGTGACAACTATGCTGATTCTGTGACATATTTTAGTTTCTCCGAAGCACTACGGCAGGTAAAGTTAATTGGTGTGCCTTATGGACTATGCTTTCAACAATTACAAGATCTGTGGAATCATGCAGATGTTGATGGAAATGGTGTCATCGACTTCGAAGAGTTCAAGACATTTCAGAAAGTTCCTATATACATAGTAATGATTGACTTTGCATTGCAGCAGAAGATTTGGAATTCAGCATGTCCAGATCATGTGTTAGAAGATGTGAAAGGGTGCATGGAAGACGTTAACACAGAATTGGAGCAGCAGCAGCAGCAGCAAGAAGCCATTGGTTTTATGATAAAGAATGCAATGCTGTATCCGCGTGAAGTGGAGAAAGGACTATGGCCAGAAGATTATTCTCTCTCTGATCATGCCAGACTCACAGCTGTGTTTTCACCAGCAAGGATGAGATGTTCAGCCACACAAAACTGA 1479 0.4239 MVVAAGAKFNLRRDNSSSHNGINGYSGDAELSRISRGCCFTSVTEVDRDPSCVSFTTFNILAPIYKRTDPQNQGIRESNCRSLWLSRNERILDCLLSESSSIMCLQEFWVGNEELVHMYEERLGDAGYNLFKLGRTNNRGDGLLTAIHKEFLRVLDYRELLFNDCGDRVAQLLHVQSVSPSQNQKGSVPQEFLIVNTHLLFPHDSSLCLVRLNQVYQILQYVELYQRENRLKPMPIILCGDWNGSKRGHVYKFLRSQGFVSSYDIANQYSDSYADAHKWVSHRNHRGNICGVDFIWLCNPNQARKPLKTSWAEAVFSILKFQLRKASENDAFAFLKGDNYADSVTYFSFSEALRQVKLIGVPYGLCFQQLQDLWNHADVDGNGVIDFEEFKTFQKVPIYIVMIDFALQQKIWNSACPDHVLEDVKGCMEDVNTELEQQQQQQEAIGFMIKNAMLYPREVEKGLWPEDYSLSDHARLTAVFSPARMRCSATQN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03183 492 Coils Coil 490 492 - -
Vimu11g03183 492 Gene3D - 336 398 - -
Vimu11g03183 492 SUPERFAMILY DNase I-like 47 267 IPR036691 -
Vimu11g03183 492 Pfam Endonuclease/Exonuclease/phosphatase family 85 291 IPR005135 GO:0003824
Vimu11g03183 492 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 38 480 - -
Vimu11g03183 492 SMART efh_1 369 397 IPR002048 GO:0005509
Vimu11g03183 492 SUPERFAMILY EF-hand 347 395 IPR011992 -
Vimu11g03183 492 ProSiteProfiles EF-hand calcium-binding domain profile. 365 400 IPR002048 GO:0005509
Vimu11g03183 492 Pfam EF hand 370 393 IPR002048 GO:0005509
Vimu11g03183 492 Coils Coil 421 441 - -
Vimu11g03183 492 Gene3D Endonuclease/exonuclease/phosphatase 32 329 IPR036691 -
Vimu11g03183 492 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Vimu11g03183 492 FunFam Putative calcium-binding protein 37 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03183 Vimu-Chr11 51191927 51194790 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03183 118 488 EF-hand Containing Proteins AT1G02270 59.893 1.11e-161 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03183 - - gmx:100788191 847.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03183 11 51191927 51194790 Vimu11g03183 11 51191927 51194790 ECH