Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03182 ATTCCAATGGGCGGAAAGAGGAGGAAGAACGATGACTCAGATGTCGAAGAATCAGAAACAGCATTCTCCAAGAGGAAGAAGACAGTGGCGACGGAGAAGAAGGACCAATTACGTCCTTCGATGATAAAGAACAAGGAGAAGAGATCTGAGGTGCACGCGAAGTTGAAGCACCAGAAGAAGCTCGATAAGCGCGCTAAGGCCAAGGCTCGTGATGCAGCTGTCAAGAAAGCTCTCGAACTCGGTGAAGAGCTTCCGGAGAAGAAGGTCCCTCGCACAATTGAAAACACTAGGGAGTTCGACGAGACCGTTTGCAAGCCCGACGATGAAGAGTTGTTTGCAGGGAATGATGCTGATGAATTCAGTTCAATTTTGCATCAGCAACAAACTCCCAAGATATTAATCACCACTTGCCGCTTCAATTCTAGTAGGGGACCTGCGTTTATATCGGAGTTGCTATCTGTTATACCAAATGCTCATTACTATAAGAGAGGAACATATGATCTAAAAAAGATTGTAGAATATGCAAAGAATAAGGACTTCACTTCTGTTATAGTTGTTCACACCAATCGTAGGGAACCAGATGCTCTTCTAATAATTGGTGTACCTAATGGGCCCACTGCTCATTTCAAGCTGTCGAAGCTTGTTTTGCGCAAGGATATTAAGAATCATGGAACTCCAACAAGTCACAAGCCTGAGCTTGTACTGAATAACTTCACAACACGTCTAGGGTCTCGAATTGGAAGGTTGATACAGTCTCTTTTTCCTCAAGATCCAGAATTTAAAGGTCGACGAGTAGTCACCTTCCACAACCAGAGAGATTTTGTTTTCTTCCGGCATCACCGGTACATTTTTGAAAAGAAAGAAGTTAAAAAAGCTGAGTCCAAGGGTAAAAAGGACAAAGGTGACAAGAGTGATAATGTTCCTGAACAGAAAGTAATTGCTCGGCTTCAGTGGTATAGTATGTGGAGTGTTGTTCAGTCAATATTAGATAACAGGAACTGGCCTTTCAGATTGTTGACGTCTGTGATCTTGATCAGAGGATGTAGACTCCAGAGAGTTAACGATGAATGTGATTATGGCAGACTAAAAGTTGTCTCCATGGAATGTGGCCCTCGTTTCACCTTGAAGTTGATTAGCCTGCAGAATGGAACCTTTGACACAAAGGGTGGGGAATATGAGTGGGTTCACAAGGCGGAAATGGATACAAGTCGAAGAAGGTTTTTCCTATGA 1230 0.4325 IPMGGKRRKNDDSDVEESETAFSKRKKTVATEKKDQLRPSMIKNKEKRSEVHAKLKHQKKLDKRAKAKARDAAVKKALELGEELPEKKVPRTIENTREFDETVCKPDDEELFAGNDADEFSSILHQQQTPKILITTCRFNSSRGPAFISELLSVIPNAHYYKRGTYDLKKIVEYAKNKDFTSVIVVHTNRREPDALLIIGVPNGPTAHFKLSKLVLRKDIKNHGTPTSHKPELVLNNFTTRLGSRIGRLIQSLFPQDPEFKGRRVVTFHNQRDFVFFRHHRYIFEKKEVKKAESKGKKDKGDKSDNVPEQKVIARLQWYSMWSVVQSILDNRNWPFRLLTSVILIRGCRLQRVNDECDYGRLKVVSMECGPRFTLKLISLQNGTFDTKGGEYEWVHKAEMDTSRRRFFL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03182 409 Gene3D - 130 293 - -
Vimu11g03182 409 SMART Brix_2 133 380 IPR007109 GO:0006364|GO:0019843
Vimu11g03182 409 Pfam Brix domain 141 378 IPR007109 GO:0006364|GO:0019843
Vimu11g03182 409 PANTHER U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 39 409 IPR044281 GO:0006364|GO:0042134
Vimu11g03182 409 SUPERFAMILY Class II aaRS ABD-related 130 292 - -
Vimu11g03182 409 FunFam Ribosome production factor 1 130 321 - -
Vimu11g03182 409 ProSiteProfiles Brix domain profile. 130 386 IPR007109 GO:0006364|GO:0019843
Vimu11g03182 409 MobiDBLite consensus disorder prediction 1 67 - -
Vimu11g03182 409 MobiDBLite consensus disorder prediction 1 51 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03182 K14846 - gmx:100791194 550.436