Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03165 ATGCTGTGTTCTTTTGTGCTGATTTACTGTTGTGAGCGACTATGGCAGCTGACGGTGTATAACCCATGCAATGGAGGTGACGTACAAGAGACGCTTTGGGGGAATGCAGGCCTGTGTGGAGTTGGAATGTTGAGGAATCGGTTCTGGGAAGTTGGAACCGGTTCTGATGAGTTGACACGAATCGGTTCTTCTCCGCATGGAATCGATTCCAATGCTACTGAATGTGTTTTAAAATGCTTCGTTTGTGTTGCAGAAACTATACGGTGGGCCTTGTTCTTGATACCGTGCTTAATTTGTTGGATGGCGGAGAAATCATGCATCAAGCGCCTTCAGAAGGAATATAGGGCCCTCTGTAAAGAGCCAGTTTCTCATGTTGTGGCTCGTCCTTCACCGAGTGATATTCTTGAGTGGCATTATGTGTTGGAGGGAAGTGAAGGAACACCTTTTGCAGGTTTAGCAAGTTTTGATCATTGCATATTGACCATTTCACCATGCGCTTTGTCATTCTGTGGATATTACTATGGAAAAATCAAGTTCCCTCCTGAATATCCGTATAAACCTCCTGGAATCAGCATGACTACACCAAATGGACGGTTCATGACACAAAAAAAGATCTGTTTGTCTATGAGCGACTTTCATCCAGAAAGTTGGAATCCCATGTGGTCTGTATCAAGCATATTAACAGGACTTCTTTCGTTCATGATGGACAACAGTCCAACCACTGGCAGCGTAAACACAACTACCGCTGAGAAGCAACGTCTAGCAAAATCTTCCCTTTCTTTCAACTGTAAGAACGCAACATTCAGGAAGATGTTCCCTGAGTACGTGGAGAAGTACAACCAGCAACAACTTTCTGAACAGGCTGCTCAAGAGCGGGTCTCATCAGAGGCGTCTCCTGACAAGAGTTCCAAGTCAGTATTGGAGAACAAATTAGAATCTTCAGGAGAAGACACGAGAAGAGTAGATGGGTTAAAGGAGATGAGGAAAAACAGAAAACCATTTCCTACATGGATGATGTTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCGTTACCTCTGCTTCAGCTGGAAATGATGGACATGGAGGCTGCGTTTACTATGTTGAGGGCTGATTTTACTCCTTTGTGTCTATTTCGCCAGCTTCTTGGTGGTGCTGAATGTTAA 1167 0.4422 MLCSFVLIYCCERLWQLTVYNPCNGGDVQETLWGNAGLCGVGMLRNRFWEVGTGSDELTRIGSSPHGIDSNATECVLKCFVCVAETIRWALFLIPCLICWMAEKSCIKRLQKEYRALCKEPVSHVVARPSPSDILEWHYVLEGSEGTPFAGLASFDHCILTISPCALSFCGYYYGKIKFPPEYPYKPPGISMTTPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYVEKYNQQQLSEQAAQERVSSEASPDKSSKSVLENKLESSGEDTRRVDGLKEMRKNRKPFPTWMMLLLFSIFGVVMALPLLQLEMMDMEAAFTMLRADFTPLCLFRQLLGGAEC 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03165 388 MobiDBLite consensus disorder prediction 286 302 - -
Vimu11g03165 388 SMART ubc_7 108 281 - -
Vimu11g03165 388 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 107 278 - -
Vimu11g03165 388 Gene3D Ubiquitin Conjugating Enzyme 101 297 IPR016135 -
Vimu11g03165 388 MobiDBLite consensus disorder prediction 303 324 - -
Vimu11g03165 388 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 105 281 IPR000608 -
Vimu11g03165 388 Pfam Ubiquitin-conjugating enzyme 172 250 IPR000608 -
Vimu11g03165 388 FunFam Ubiquitin-conjugating enzyme E2 34 101 296 - -
Vimu11g03165 388 MobiDBLite consensus disorder prediction 286 324 - -
Vimu11g03165 388 CDD UBCc 107 276 IPR000608 -
Vimu11g03165 388 SUPERFAMILY UBC-like 106 276 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03165 Vimu-Chr11 51016223 51024924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03165 101 357 Miscellaneous Gene Families AT1G17280 71.705 2.25e-130 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03165 K04554 - gmx:100778181 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03165 11 51016223 51024924 Vimu11g03165 11 51016223 51024924 ECH