Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03155 ATGGATGCAGTGGACAAGACTTTTTCTGAGCTTGTCAGCATCGTCAAAACGTGGATTCCCTGGCGATCTGAACCGGCAAATGTGTGTAGAGATTTTTGGATGCCTGATGAGAGTTGTAGAGTATGCTACGAGTGTGATTCACAGTTCACCTTGTTTAACCGCAAGCACCACTGTCGTTTATGTGGACGGATTTTCTGTAACAAGTGTACAACAAACTCTGTTCCTGCCCCAGTTTGGATAATAGTTGGAAAAGATTCATGTACAACAAACAAGAGTGCATCAAACAAGTTTGAGTTGGAAAAGATTCGTGTATGTAATTATTGTTACAAGCAATGGGAGCAAGGTGTAGTTGCTTTTGATAACAGTGTTCCGGTTTCCAATCTGGATAATAGTGCTTCAGCATCAACTTCAAGCTTGAATAGCAGTAAAACCAGTGCCACTGCAAACAGTAGTAATATTACTCTTTGCTCCATGCCTTATTCAGTTGGATCTTATCAACAAACGCAACAGGGTTCTGTTCTGAACCTACATAAATCACCTGTGAAGGGAAAAGACACGGATACTGATAGGGAAGGCTTATCGGCATTAGGAGGGAGGAGTGATCTTGTAGCAGATCTGGGTGATTCATTACCGAAGCAATGTGGATTCGCAATTAATAGGACTGATGATGATGAGGATGAGTATGGTGTGTATCGGTCAGATTCCGACACTAGACACTATTCTCAAGTGAATAACTACTATGGACAGGCTGAGTTTGATAGGATAGGCCTCATTGATGGCTCAAGGAAAGTGGATAATGATGTAGAAAACATTGATGCAAAACTCCCTTCAAACTACAGTTTTGACACTGACACACAGGGTTTGGAAGGAGCCCCAATTATTGCAAAAAATGAGGATGAACCTGATATCTGTGATGAAAATGAAGCCCCTTCCTCATTATATGTCTCAGAGGACGTTGATGTTGAACCTGTTGATTTTGAAAATAACGGACTTCTCTGGCTCCCTCCTGAACCAGAAGACGAAGAAGATGAACATGAAGCTATTTTGTTTGATGATGATGATGATGATGATGGGAATGTCATTGGAGAGTGGGGGTATATACGTAGTTCTAGCAGTTTTGGAAGTGGTGATTATAGACAGAGAGATAGGTCAAATGAGGAGCAGAAGAAGGTGATGAAGAATGTAGTTGACGGGCACTTTAGGGCATTGGTAGCTCAGCTGCTGCAGGTTGAAAACCTATCTGTTGAAGATAACGACGAGAACAGTTGGCTGGAGATTGTCACATCTCTGTCATGGGAAGCGGCTACAATATTGAAACCAGATATGAGCAAAGGTGGAGTGATGGACCCAGCTGGTTATGTGAAAGTCAAATGCATAGCATGTGGGAATCGCAATGAAAGTGTGCTGGTTAAAGGAGTTGTTTGTAAAAAAAATGTGGCTCACCGGCGAATGTCATCAAAAGTGGATAAACCTCGCTTGTTGATCCTTGGAGGGGCTCTGGAGTATCAGCGTGTTACAAACCTCTTATCTAGCGTAGATACTCTATTGCAGCAGGTTGAAATGGATCATCTGAAGATGGCTGTGGCAAAGATAGCTTCACACCAGCCAAACATGTTGTTAGTGGAGAAATCAGTCTCACGATATGCACAGGAATATCTTCTTGCAAAAGACATAACTCTGGTTCTCAATGTCAAGAGACCACTTTTGGAGCGCGTAGCACGTTGCACAGGTACTCAAATAGTGCCTTCAATCGACCATCTTTCATCGCAAAAGTTGGGTTACTGTGAATCAGTTCATGTTGAGAAGTTTCTTGAAGACCTAAACTGTGTTGGTCAGTGTGGGAAAAAAACATTGAAAACATTGATGTTTTTTGAAGGTTGCCCAAAACCATTTGGTTTCACTATTTTACTGAAAGGGGCTGACAAGGATGAGTTGAAAAAGGTAAAGCATGTGGTTCAGTATGGAGTTTTTGCAGCTTACCATTTGGCTATGGAGACATCTTTTCTTGCAGATGAGGGAGCATCCCTGCCAGAAATTCCATTAAACAGTCTGGCCCTTCCAGATCAAGCATTAGCCATTCAGAGGTCCATTTCAACAGTTCCAGGTTTCGGTATTGCTGACAATGAAAAACCTCAAGGGCATGAACCTGACACTGGACCCAGGAGAACCAAAAGTGTCCCAATTTCTGAACTAGCATCTACGACCTGCAGTCCAGGGCCTTGTGTCTCTAATGGTGCTTCTCAACTGATACCACTTGGATCAAGTCTCGACCATTCAACTGCCTTTTTCTCCTCTATTGTTGCTTCAGGAAATTCAATTGCAGAATCACACTGTGATAAGCTTCCTCCATGCACTAGAAGAGACAGAAATGAAATGAACCTCAAACAACCTGTTGTGAAAGAAACTTCTATGGTGGACGACACCCTGGTTATTGTGGATGATCCTACTGCAGTCGACCCTGGAACTTCAAAGAAATTATATCAAGGCTTGTCAACTAACACTCCACAAAATGGTGATAGCAAAATCTCTACAAACCAGTTAAGTGGGTCAGGATCTTTATCTCCAAAAGATGGTCCAAACCATCCCGAGAATCTTGAAATCCCAAATGAAGAGTTTATTCTTGAAAAAGAAGAGTTTCCTCCATCCCCGTCTGACCATCAAAGCATTTTGGTGTCTTTGTCCTCCCGGTGTGTATGGAAGGGAACTGTGTGTGAGAGGTCTCATCTCTTTCGAATTAGATACTATGGCAATTTTGATAAACCATTGGGTCGGTATCTGCGAGACCACTTATTTGATCAGAGTTATCGATGCCATTCTTGTCAAATGCCATCAGAAGCACATGTGCAGTGCTATACTCATCGTCAGGGAACACTTACCATATCAGTCAAGAAACTACCAGAAATTATCCTACCCGGGGAAAGGGATGGAAAGATTTGGATGTGGCACAGGTGCTTGCGGTGTCCAAGAATCAATGGCTTTCCTCCTGCTACACAGAGGATAGTAATGTCTGATGCTGCTTGGGGTTTATCGTTAGGGAAATTTTTGGAGCTCAGTTTCTCAAACCATGCTGCAGCCAGCAGGGTGGCAAGCTGTGGCCATTCATTACACAGAGATTGTCTTCGTTTCTACGGATTCGGAAAAATGGTTGCTTGTTTTCGATACGCATCCATTGATGTTCACTCCGTCTACCTTCCCCCCCACACACTTATATTTGATTATGGGAATCAGGATTGGATACAGCGAGAATCAGATGAGGTGGTCAACCGGGCAGAGCTTTTATTCTCTGAGGTACTCAATGGTCTCAGTCAAATTGGAGAGCAAAGATCTAATGCAGTCCAAATCAGTAATGGCCATAAAACACCTGAAGTAAGACGCCAAGTAGCTGAACTAGAGGGGATGTTGCAAAAGGAGAAACTAGAATTTGAGGTGGGGTCTTCGGAAGCTCTTCGAAAGATTTTGAATCAAGAAAAGAGAAATGGCCAACCGGGGATTGACATTCTGGAAATTAATCGATTGTGGAGGCAGTTACTTTTTCAATCATATATGTGGGATCACCGCCTTATTTATGCAGCAAACTCAGTCAATTCCAATAATGGATCCGGTTCAAGCAGTCCAATTTCCGAAGATAAGGAGAAAACTGTTGATGAAAATCAAATGACCATCAACTCTGTTCATGATGGTCCAAACCTTAACGAAAACCCTTGTCTTGGAGGAGGAAGTGCAGTAGTTGATGGGAAAATTTCACCAGATCTAGAAAGCGAGATGACCGAAAAAGAAAATCATGAGAAAGATGAAAGATCTATTTCAATCAGAAAAAGTATAAATGATCAATCTGATCCCTTAGAACCTGAATTGGGTGTTCCCAGAACTCTATCAGATGGGCCATTTCCCATCGTACCTAGTTTGTCTGAAACACTTGATGCAAAATGGACTGGTGAAAATCACTCTGGATTTGGCATTCCAAAGGATAACAGCTCTGTGAATCCCGATTTGGCAGATACTTTGATGATCGGTGTACAAAAGGAAACATATCATCTAGGGGATCGTACAGAAGATCAAAATGGTTCCAAGAGTTTTTATTCTTCTTTTAAAGCTCAGGATAATATGGAAGACTCTTCGAGCTGGTTAGGAATGCCCTTCTTGAACTTCTATCGCCAATTTAACAAAAACCTTTTTTCTAGTACGCAGAAGTTTGATACCCTAGTTGACTACAATCCAGTTTTCGTGTCATCTTTCCGGAAGCAGGAACTCCAGGGTGGGGCAAGGCTTCTTCTGCCAATTGGTGTCAATGACACTGTAATACCAGTATATGATGACGAACCCTCAAGTGTTATAGCTTATGCCTTGATGTCATCAGAATATCATCTCCAATTGACTGATGAAGGAGAAAGGCCAAGAGAAGGAAGTGAGTTCACTTCATCATATTTGTCTGACTCAGGCACCTTCCTGTCATTCTCTTCTGTTGATGAAACAGCCTTTGATTCTCAGAAAAGTTTTGGATCGATAGAGGATATGATACTTTCCATGTCTGGGTCTCGTAGTTCATCAATGTTTGATCCAATGTTATATACCAAGGCTATGCATGCCAGAGTTTCCTTTGGAGAAGACGGTCCACTTGGCAAGGTAAAATATTCTGTGACTTGTTACTATGCCAAGCGTTTTGAAGCCTTAAGAAGGGTGTCTTGTCCTTCTGAGCTTGACTACATAAGGTCTCTGAGTCGCTGTAAGAAATGGGGAGCTCAAGGTGGGAAGAGTAATGTATTTTTTGCAAAAACATTGGATGATCGATTTATCATTAAACAAGTTACGAAAACAGAGCTAGAATCATTCATTAAATTTGGTCCCGAATACTTCAAGTATCTTTCTGAATCCATAGCCACTGGAAGTCCGACATGTCTGGCTAAAATTCTTGGCATATACCAGGTTACATCGAAGCATATTAAAGGAGGGAAAGAGTCAAGGATGGATGTTTTGGTTATGGAGAATCTTCTGTATAGGAGGACTGTGACACGACTTTACGATCTTAAAGGATCTTCCAGGTCTCGGTATAATGCAGATAGTACCGGGAAAAACAAAGTTCTACTGGACCAGAACTTAATTGAAGCAATGCCAACTTCTCCCATATTCGTGGGAAACAAAGCCAAACGATCTTTAGAGAGAGCTGTCTGGAATGACACAGGTTTTCTTGCTTCTGTTGATGTAATGGACTATTCTTTACTGGTTGGGGTGGATGAAGAGAAGCATGAGTTGGTTATTGGGATCATTGATTTCATGAGGCAGTATACCTGGGACAAGCATCTTGAAACATGGGTAAAAGCTTCAGGCATACTTGGGGGACCAAAGAACACACCTCCAACAGTTATATCACCCAAGCAATACAAGAAAAGGTTCAGGAAAGCAATGACCACTTACTTTCTCATGCTTCCAGATCAATGGTCTCCTCCTTCTATTGTTGCTAGTAATTCTCAGTCTGATTTAGGTGAAGACAACCCACAATCTAGGACCTCAGCTGAATGA 5517 0.42 MDAVDKTFSELVSIVKTWIPWRSEPANVCRDFWMPDESCRVCYECDSQFTLFNRKHHCRLCGRIFCNKCTTNSVPAPVWIIVGKDSCTTNKSASNKFELEKIRVCNYCYKQWEQGVVAFDNSVPVSNLDNSASASTSSLNSSKTSATANSSNITLCSMPYSVGSYQQTQQGSVLNLHKSPVKGKDTDTDREGLSALGGRSDLVADLGDSLPKQCGFAINRTDDDEDEYGVYRSDSDTRHYSQVNNYYGQAEFDRIGLIDGSRKVDNDVENIDAKLPSNYSFDTDTQGLEGAPIIAKNEDEPDICDENEAPSSLYVSEDVDVEPVDFENNGLLWLPPEPEDEEDEHEAILFDDDDDDDGNVIGEWGYIRSSSSFGSGDYRQRDRSNEEQKKVMKNVVDGHFRALVAQLLQVENLSVEDNDENSWLEIVTSLSWEAATILKPDMSKGGVMDPAGYVKVKCIACGNRNESVLVKGVVCKKNVAHRRMSSKVDKPRLLILGGALEYQRVTNLLSSVDTLLQQVEMDHLKMAVAKIASHQPNMLLVEKSVSRYAQEYLLAKDITLVLNVKRPLLERVARCTGTQIVPSIDHLSSQKLGYCESVHVEKFLEDLNCVGQCGKKTLKTLMFFEGCPKPFGFTILLKGADKDELKKVKHVVQYGVFAAYHLAMETSFLADEGASLPEIPLNSLALPDQALAIQRSISTVPGFGIADNEKPQGHEPDTGPRRTKSVPISELASTTCSPGPCVSNGASQLIPLGSSLDHSTAFFSSIVASGNSIAESHCDKLPPCTRRDRNEMNLKQPVVKETSMVDDTLVIVDDPTAVDPGTSKKLYQGLSTNTPQNGDSKISTNQLSGSGSLSPKDGPNHPENLEIPNEEFILEKEEFPPSPSDHQSILVSLSSRCVWKGTVCERSHLFRIRYYGNFDKPLGRYLRDHLFDQSYRCHSCQMPSEAHVQCYTHRQGTLTISVKKLPEIILPGERDGKIWMWHRCLRCPRINGFPPATQRIVMSDAAWGLSLGKFLELSFSNHAAASRVASCGHSLHRDCLRFYGFGKMVACFRYASIDVHSVYLPPHTLIFDYGNQDWIQRESDEVVNRAELLFSEVLNGLSQIGEQRSNAVQISNGHKTPEVRRQVAELEGMLQKEKLEFEVGSSEALRKILNQEKRNGQPGIDILEINRLWRQLLFQSYMWDHRLIYAANSVNSNNGSGSSSPISEDKEKTVDENQMTINSVHDGPNLNENPCLGGGSAVVDGKISPDLESEMTEKENHEKDERSISIRKSINDQSDPLEPELGVPRTLSDGPFPIVPSLSETLDAKWTGENHSGFGIPKDNSSVNPDLADTLMIGVQKETYHLGDRTEDQNGSKSFYSSFKAQDNMEDSSSWLGMPFLNFYRQFNKNLFSSTQKFDTLVDYNPVFVSSFRKQELQGGARLLLPIGVNDTVIPVYDDEPSSVIAYALMSSEYHLQLTDEGERPREGSEFTSSYLSDSGTFLSFSSVDETAFDSQKSFGSIEDMILSMSGSRSSSMFDPMLYTKAMHARVSFGEDGPLGKVKYSVTCYYAKRFEALRRVSCPSELDYIRSLSRCKKWGAQGGKSNVFFAKTLDDRFIIKQVTKTELESFIKFGPEYFKYLSESIATGSPTCLAKILGIYQVTSKHIKGGKESRMDVLVMENLLYRRTVTRLYDLKGSSRSRYNADSTGKNKVLLDQNLIEAMPTSPIFVGNKAKRSLERAVWNDTGFLASVDVMDYSLLVGVDEEKHELVIGIIDFMRQYTWDKHLETWVKASGILGGPKNTPPTVISPKQYKKRFRKAMTTYFLMLPDQWSPPSIVASNSQSDLGEDNPQSRTSAE 1838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03155 1838 CDD PIPKc_PIKfyve 1542 1805 IPR044769 GO:0000285
Vimu11g03155 1838 SUPERFAMILY SAICAR synthase-like 1537 1805 - -
Vimu11g03155 1838 MobiDBLite consensus disorder prediction 1193 1213 - -
Vimu11g03155 1838 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 24 119 - -
Vimu11g03155 1838 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 1504 1662 IPR027484 -
Vimu11g03155 1838 MobiDBLite consensus disorder prediction 814 865 - -
Vimu11g03155 1838 Gene3D GroEL 465 639 IPR027409 -
Vimu11g03155 1838 MobiDBLite consensus disorder prediction 704 726 - -
Vimu11g03155 1838 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 118 IPR013083 -
Vimu11g03155 1838 SMART fyve_4 28 114 IPR000306 GO:0046872
Vimu11g03155 1838 SMART PIPK_2 1515 1806 IPR002498 GO:0016307|GO:0046488
Vimu11g03155 1838 Pfam FYVE zinc finger 33 112 IPR000306 GO:0046872
Vimu11g03155 1838 PANTHER 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE-RELATED 23 1820 - -
Vimu11g03155 1838 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 36 113 IPR017455 -
Vimu11g03155 1838 SUPERFAMILY GroEL apical domain-like 466 639 IPR027409 -
Vimu11g03155 1838 CDD Fab1_TCP 401 673 - -
Vimu11g03155 1838 Gene3D - 1664 1806 - -
Vimu11g03155 1838 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase FAB1 1664 1806 - -
Vimu11g03155 1838 Pfam TCP-1/cpn60 chaperonin family 406 669 IPR002423 GO:0005524
Vimu11g03155 1838 FunFam 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B 1506 1662 - -
Vimu11g03155 1838 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 1481 1805 IPR002498 GO:0016307|GO:0046488
Vimu11g03155 1838 MobiDBLite consensus disorder prediction 1254 1272 - -
Vimu11g03155 1838 MobiDBLite consensus disorder prediction 825 857 - -
Vimu11g03155 1838 MobiDBLite consensus disorder prediction 1817 1838 - -
Vimu11g03155 1838 MobiDBLite consensus disorder prediction 1193 1207 - -
Vimu11g03155 1838 FunFam 1-phosphatidylinositol 3-phosphate 5-kinase isoform X1 465 639 - -
Vimu11g03155 1838 MobiDBLite consensus disorder prediction 1254 1293 - -
Vimu11g03155 1838 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 1581 1747 IPR002498 GO:0016307|GO:0046488
Vimu11g03155 1838 SUPERFAMILY FYVE/PHD zinc finger 31 114 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03155 Vimu-Chr11 50937258 50945457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03155 2 1838 EF-hand Containing Proteins AT3G14270 58.637 0.0 2049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03155 K00921 - gmx:100819364 3120.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03155 11 50937258 50945457 Vimu11g03155 11 50937258 50945457 ECH