Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03144 ATGCAAGAAGAGGTTATAGAGCCTGAGAACTGTCGTTCGATTATCCCTAAAGAAGTGTTTGATAGATGGGAAGATGCTCTTTGTGAGAATGTAGTGCTTGAATCACAAAAGTTTTACTGTCCTTTCAAGGATTGCTCAGCTATGATGATATATGATGAAGGAGAAGTTGTGACTTCATCGGAGTGTCCACATTGCCATAGACTGTTTTGTGCACAGTGCAAGGTTTCGTGGCATGCAGGAATAGACTGTGAGAAGTTTCAGATGTCGAAAGCAGAAAACGGAGAGTCATTGGTGATTGAACTTGCAAAGACTAAAAATGTGGCGAAGAATTTTGCTATGTCTGTGGATCGACTTGGAATGTTGGACATAATTGCTGAGTGA 381 0.4094 MQEEVIEPENCRSIIPKEVFDRWEDALCENVVLESQKFYCPFKDCSAMMIYDEGEVVTSSECPHCHRLFCAQCKVSWHAGIDCEKFQMSKAENGESLVIELAKTKNVAKNFAMSVDRLGMLDIIAE 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03144 126 Gene3D - 38 89 - -
Vimu11g03144 126 SUPERFAMILY RING/U-box 25 89 - -
Vimu11g03144 126 SMART ibrneu5 21 83 IPR002867 GO:0008270
Vimu11g03144 126 Pfam IBR domain, a half RING-finger domain 22 83 IPR002867 GO:0008270
Vimu11g03144 126 ProSiteProfiles TRIAD supradomain profile. 1 126 IPR044066 -
Vimu11g03144 126 CDD BRcat_RBR_unk 34 86 - -
Vimu11g03144 126 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 5 95 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03144 Vimu-Chr11 50835121 50836025 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03144 K11975 - gmx:100816161 169.859