Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03122 ATGAGCAGAGTTAACGTGGATTTGGCAGCTGCAGTAAACAACCTCTTCAATATTCCTGAAACCATGGAAAAGTTCATTTTTCCTTCTTCTCATGGCCATGACCACCATGAGAGCAGAGGGGTTTCTAGCATCATTCCAGTGGACATTTTGGACACTCCGAAGGAATTTATATTCTTCATGGATGTTCCTGGTCTCTCCAAGTCTGAAATTCAGGTGACAGTTGAAGATGAGAAGACACTTGTGATACGAAGCAATGGGAAGAGGAAACGCCATGATGGAGATGATGAAGGGTGCAAGTATCTTAGGCTGGAGAGGAGAGGGCCTCAGAATTTGCTGAGGAAGTTCCGTTTGCCTGAGAATGCAAATGTGTCTGCAATCACAGCTAAATGCGAAAATGGGGTTCTCACTGTAGCTGTTGGGAAGCACCCTCCTCCAAAATCCAAATCTGTTCAAGTTGCTATTGCATGA 468 0.4466 MSRVNVDLAAAVNNLFNIPETMEKFIFPSSHGHDHHESRGVSSIIPVDILDTPKEFIFFMDVPGLSKSEIQVTVEDEKTLVIRSNGKRKRHDGDDEGCKYLRLERRGPQNLLRKFRLPENANVSAITAKCENGVLTVAVGKHPPPKSKSVQVAIA 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03122 155 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 10 152 IPR031107 -
Vimu11g03122 155 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 38 155 IPR002068 -
Vimu11g03122 155 Gene3D - 5 154 IPR008978 -
Vimu11g03122 155 SUPERFAMILY HSP20-like chaperones 29 154 IPR008978 -
Vimu11g03122 155 FunFam 17.4 kDa class III heat shock protein isoform A 5 153 - -
Vimu11g03122 155 CDD ACD_sHsps-like 48 141 - -
Vimu11g03122 155 Pfam Hsp20/alpha crystallin family 48 152 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03122 Vimu-Chr11 50662594 50663180 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03122 K13993 - gmx:100803161 269.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03122 11 50662594 50663180 Vimu11g03122 11 50662594 50663180 ECH