Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03105 ATGGAAGAAGAAATGGCGATGGACTCTTCTCCGAATCCCGGTGATAGTTTCTTCGACCCTCAGAATCTCTCTTCGCGACAGCAGTTCCGCAGATATGGGAAGAGGCACTCAACTTCAGGTGCTTCAATCCAACTGGACAACTCGGCTTCCAAGTTGAGTGAAACTGGGTTGTTATATGATGGCCAAAGCATCCATAGTCCTACTAATGCAGCACTTGTTCTTGAAAATATTAAACAAGAGGTTGAGAGTTATGATGCTGATTACTTGGAAGAGAAGACACCATATTCCACTAGGAGGAGGTTGTCCACTGACGTTCCTGGTGTTCCTGGTGTGGATGCTGGTTTTGATTCTGTTCGCTACTCATTAAAGGCTTGTAAGACAGAGGGTGACACATTGGGAGATGGTGCGGACACAATATTTACTTTGTTTGCATCTCTGCTTGATTCTTCATTACAAGGACTGATGCCTATTGCTGATTTGATACTAAGAGTCGAGAATGCATGTCGAAATGTTTCAGAGTCTATAAGGTATGGTTTGAATGTAAGGCATCGTGTTGTTGAAGACAAGTTGATGAGGCAGAAGGCTCAACTTTTGCTTGATGAGGCGGCAACATGGTCTCTCTTGTGGTTCCTCTATGGAAAAGGAAATATATCTCAAACCATATACTTTTGGGATTTTAAGTATCTATTGTTGACTGAAGAACTATCTAAAGATCAAATACTGGTGTCGGGAACCTCACATGTGGTGGCTTGTGAGTTTGTTGTGGAGGATCATACAGCTCAATTATGCCTTCGGATAGTCCAGTGGTTAGAAGGTTTAGCTTCTAAAGCACTAGACTTGGAAGCGAAGGTGCGTGGATCTCATGTGGGTAGTTATCTCCCTAACTGTGGAGTTTGGCATCATACTCAGCGTTACCTGAAGAAAGGAACTCTTGACATGAATGTTGTTCATCACTTGGACTTTGATGCCCCAACTCGTGAAAATGCTAATCTTTTACCTGATGACAAGAAACAAGATGAATCTCTTCTAGAAGATGTGTGGACTCTTTTAAGGGCTGGAAGGCTAGAAGAGGCTTGTGGACTTTGCCGGTCTGCTGGACAGCCATGGAGAGCTTCTTCTCTTTACCCATTTGGAGGATTGAACCAGTTTCCTTCTGTTGAAGTTCTGGTCAAGAATGGTAAAAATAGAACTTTGCAAGCTGTTGAGTTTGAAAGTGGTATTGGTCATCAGTGGCATCTTTGGAAATGGGCTTCATATTGTGCATCAGAGAAAATAGCAGAGCAAGGAGGGAAATGTGAAGCAGCTGTATATGCAGCCCAGTGTAGCAACCTTAAACGGATGCTTCCACTCTGCAATGACTGGGAGTCAGCATGCTGGGCAATGGCAAAGTCTTGGCTAGATGTGCAAGTGGACTTGGAAATCACTCGCTCACAGCCAGGGGGAGTTGATCAACTTAGAACATTTGGAGATGTAATTGATGGAAGTCCTGGACGTGCCGATGGTTCTTTTGAGCCTTCTAATGGACCTGAAAATTGGCCAATTCAAGTTTTGAATCAACAACCTCGACAGCTCTCATCTCTTCTTCAAAAACTTCATTCTGGGGAAATGATCCACGAGTCTGTTACTAGACAATGCAAGGAGCAACAACGTCAAATTCAGATGACTTTAATGCTAGGGGACATACCACGCGTACTGGACCTTATATGGTCATGGATAGCTCCTACTGAAGATAATCAGAATGTATTTAGGCCGTCTGGAGATCCTCAAATGATACGATTTGGTGCACATCTGGTCCTTGTGCTTCGATATTTATTAGCTGAGGAAATGAAGGACACCTTCAAGGACAAGATTCTAAGTGTTGGCGATAATATTTTGCATTTGTATGCCCTATTTCTCTTTTCAAAGGAGCATGAAGAGTTGGTGGGCATATATGCTTCTCAGCTTGCATGTCACCGTTGCATTGATCTCTTTGTACACATGATGGAGCTTAGGCTGCACAGCAGTGTACATGTCAAATACAAGATATTCCTTTCTGCTATGGAATATTTACCATTTTCTTCTCTGGATGATTCCAAGGGAAATTTTGAAGACATAATTGAGAGAATTTTGTTGAGATCCCGAGAGATCAAGGTTGGCAAATACGATAACCTGTCAGATGTTGCAGAACAACACAGACTGCAGAGTCTTCAGAAAGCTAAAGTTATCCAATGGCTTTGCTTTACACCACCATCAACAATTACAAATGTCAAAGATGTCAGTAAAAAGCTTCTTCTTCGAGCACTGGTTCATAGCAACATACTCTTCAGGGAGTTTGCTTTGATTTCTATGTGGAGAGTGCCAGCAATGCCGATAGGTGCCCACACAGTACTTGGCTTTCTTGCTGAACCTTTAAAACAGCTTGCTGAAACTCTTGAGACCTCTGAGGATTATAATGTTTTTGAGGACCTGAGGGAGTTCCAAGACTGGCGTGAGTATTACTCTTGTGATGCAACCTACCGGAATTGGCTTAAAATTGAAGTGGAGAATGCAGAGGTTCCTGTCACTGAACTATCATTGGAGGAAAAGGAAAGGTCCATTTCAGCTGCCAAGGAAACACTGAATGCATCCCTTTCACTCCTACAAAGAAAAGAAACACCTTGGTTGGTTTCAACTGATCGTATGTATGAATCAGTTGAACCAGTTTTCCTTGAACTTCATGCAACAGCAATGCTCTGCCTGCCATCTGGAGAGTGTTTGTGTCCAGATGCTACTGTTTGTACTACACTTACTAGTGCTCTCTATTCTTCAGCTGGTGATGAGGTCGTCTTAAATCGACAATTAATGGTTAATGTTTCCATATCTTCAAGGGACAGTTATTGCGTTGATGTTGTTCTTCGCTGCATAGCTATTGCTGGTGATGGACTTGAACCACATGAGCTCAATGATGGTGGTATTCTTGGCACCATCCTGGCTTCTGGTTTCAAAGGTGAGCTTCCTCGGTTTCAAGCTGGAGTTACAATGGAGATATCCCGTTTGGATGCTTGGTATTCTGACAAAGATGGCAACTTAGAGTGTCCGGCAACCTACATAGTGAAAGGACTTTGTCGTAGGTGCTGCCTTCCAGAAGTCATTCTTCGTTGCATGCAAGTCTCTGTTTCTCTAATGGGGTCCGGAGTCCTGCCTGACTGTCATGATACTTTGATAGAGCTGGTTGGCAGTCCGGAAACTGACTTTCTGCACTTGTTTAGTCAACAACAATTACAGGCAAGATTATACTTTCGTGTTTCTCAAAGAAACATTAGGCTCTGCTTTAAACTTCACCCTTCGTCTATTAGCCTATTTTATGTTTGCGCGGAGTCATGA 3342 0.4294 MEEEMAMDSSPNPGDSFFDPQNLSSRQQFRRYGKRHSTSGASIQLDNSASKLSETGLLYDGQSIHSPTNAALVLENIKQEVESYDADYLEEKTPYSTRRRLSTDVPGVPGVDAGFDSVRYSLKACKTEGDTLGDGADTIFTLFASLLDSSLQGLMPIADLILRVENACRNVSESIRYGLNVRHRVVEDKLMRQKAQLLLDEAATWSLLWFLYGKGNISQTIYFWDFKYLLLTEELSKDQILVSGTSHVVACEFVVEDHTAQLCLRIVQWLEGLASKALDLEAKVRGSHVGSYLPNCGVWHHTQRYLKKGTLDMNVVHHLDFDAPTRENANLLPDDKKQDESLLEDVWTLLRAGRLEEACGLCRSAGQPWRASSLYPFGGLNQFPSVEVLVKNGKNRTLQAVEFESGIGHQWHLWKWASYCASEKIAEQGGKCEAAVYAAQCSNLKRMLPLCNDWESACWAMAKSWLDVQVDLEITRSQPGGVDQLRTFGDVIDGSPGRADGSFEPSNGPENWPIQVLNQQPRQLSSLLQKLHSGEMIHESVTRQCKEQQRQIQMTLMLGDIPRVLDLIWSWIAPTEDNQNVFRPSGDPQMIRFGAHLVLVLRYLLAEEMKDTFKDKILSVGDNILHLYALFLFSKEHEELVGIYASQLACHRCIDLFVHMMELRLHSSVHVKYKIFLSAMEYLPFSSLDDSKGNFEDIIERILLRSREIKVGKYDNLSDVAEQHRLQSLQKAKVIQWLCFTPPSTITNVKDVSKKLLLRALVHSNILFREFALISMWRVPAMPIGAHTVLGFLAEPLKQLAETLETSEDYNVFEDLREFQDWREYYSCDATYRNWLKIEVENAEVPVTELSLEEKERSISAAKETLNASLSLLQRKETPWLVSTDRMYESVEPVFLELHATAMLCLPSGECLCPDATVCTTLTSALYSSAGDEVVLNRQLMVNVSISSRDSYCVDVVLRCIAIAGDGLEPHELNDGGILGTILASGFKGELPRFQAGVTMEISRLDAWYSDKDGNLECPATYIVKGLCRRCCLPEVILRCMQVSVSLMGSGVLPDCHDTLIELVGSPETDFLHLFSQQQLQARLYFRVSQRNIRLCFKLHPSSISLFYVCAES 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03105 1113 Pfam Nuclear pore protein 84 / 107 198 886 IPR007252 GO:0005643|GO:0017056
Vimu11g03105 1113 FunFam Nuclear pore complex protein 719 887 - -
Vimu11g03105 1113 MobiDBLite consensus disorder prediction 1 45 - -
Vimu11g03105 1113 PANTHER NUP107-RELATED 21 1086 IPR007252 GO:0005643|GO:0017056
Vimu11g03105 1113 Gene3D - 720 914 - -
Vimu11g03105 1113 Gene3D - 299 448 - -
Vimu11g03105 1113 ProSitePatterns Zinc finger C2H2 type domain signature. 650 670 IPR013087 -
Vimu11g03105 1113 MobiDBLite consensus disorder prediction 14 45 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03105 K14301 - gmx:100786552 2035.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03105 11 50532818 50550623 Vimu11g03105 11 50532818 50550623 ECH