Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03104 ATGAGTATCTTGCAAGGGAAACGCAAGCGCCAAGACCTGGCTTCTACACTCTCTGCGTCGATGACGAACGAGGAGCGGATGATTTACAATATCATTCGCGGGAAGAAGGAGATGGGGATATGGCAAGGGGACATCAAAAGAGAAACCAACATCCCTGACAGCATTTTGAAGAAATCCATCAAGTTGCTAATCTCCAAGACTCTTATCAAGGAAGTTGTGAACATCCAAAACAAGTCCAAGAAGGTGTTGATGGCCATGGAATTCGAGCCCTCTAAGGAGATCACTGGTGGAGAGTGGTATACCGAAGGCAGGCTCGACACACAGCTCATTGATGCTCTTTCTGATGTCTGCTTGAAGCTTATTTCCCGGAAAAAGATCGCTACCCGTGATGCAATCCTCGAGTGGACTAGAACCTTAGGAAGTGAGGTTTTTCCTGGTGGAGTAAGTCCAGGACAGGTGGAACAAATTCTGAAAGTTTTGGTTATGGAAAATAAGTTACAAGAGGTGAACAGCACTGGCTTTGGGGATTTTTCATCTGTTCCTGCTGGTGAAGTTTGTTTTAGGTTGGCGAAAAAGGTAGGCACCAATGTTAAAGTTGGTGCCATGGCTTCTATTCCTTGTGGGGTTTGTCCTAGGATTCAATTTTGTACACCCAATGGTGGGTTTCCTACAATCACCAGCCCCCAGGCTGCTACATCCTGTTCTTTAGGGAGCTATCGACTAGCTTGCCTTCCACAAAGGCCCCAATCATCTCAAAATGACAAGATGGAGTTCCTCTCATTCCCTCTTCTTTTTGCATACAGCTACAGGTCTTCTAGCATAAACCCACCCTCAGCAGTGTCACACCTAATCTTGCAGTCAACTTGCTGGGCAATGGTAAAGTCTTGGCTAGATGTGCAAGTGGACTTGGAAATCACTGGTTCACACAGCCAGGGGGAATTGATCTATATTTGGATATGTATTGAAGTCAAGAGTCATGGAAGGTTTTGTGGAGGCTTGGGAGAGGAGGCAACTTTGAGGTTTGTTTGTGTTGTAGAAGCTCATTTGGCTTGGTTTTTGGTGCCTTGGCTTCATATGGACAGGGAGAGAGCTATGGAGTTTCTGTCTTTTCAGGTTGGCAGGGCAAGTCTAGCTTTAACAGAAGAGCAGAAAATAAAGCTTTCTATTGCAAGAGCTTTGCTTTTAAATCCATCCATTCTTCTTCTTGACGAGGTTACTGGTGGACTTGATTTTGAGACTGAGAGGCTTAGTCTTATAAAGAATGCTGATTATATAGCTGTCATGGAGGATGGTCAACTTGTTGAAATGGGTACACATGATGAGTTACTGACCCTGGATGGCTTATACGCAGTGCTTCTACGACGTGAAGAAGCCACAAAGCTTCCCAAGAGGTTTGTTACCACCTCAAATCACGGTTCAACTTTTGCCATGCACTTTTTTGTGTTTGTGAAGAATATAACATGA 1464 0.446 MSILQGKRKRQDLASTLSASMTNEERMIYNIIRGKKEMGIWQGDIKRETNIPDSILKKSIKLLISKTLIKEVVNIQNKSKKVLMAMEFEPSKEITGGEWYTEGRLDTQLIDALSDVCLKLISRKKIATRDAILEWTRTLGSEVFPGGVSPGQVEQILKVLVMENKLQEVNSTGFGDFSSVPAGEVCFRLAKKVGTNVKVGAMASIPCGVCPRIQFCTPNGGFPTITSPQAATSCSLGSYRLACLPQRPQSSQNDKMEFLSFPLLFAYSYRSSSINPPSAVSHLILQSTCWAMVKSWLDVQVDLEITGSHSQGELIYIWICIEVKSHGRFCGGLGEEATLRFVCVVEAHLAWFLVPWLHMDRERAMEFLSFQVGRASLALTEEQKIKLSIARALLLNPSILLLDEVTGGLDFETERLSLIKNADYIAVMEDGQLVEMGTHDELLTLDGLYAVLLRREEATKLPKRFVTTSNHGSTFAMHFFVFVKNIT 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03104 487 FunFam DNA-directed RNA polymerase III subunit RPC6 22 87 - -
Vimu11g03104 487 PANTHER RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATED 18 234 IPR016049 -
Vimu11g03104 487 Pfam RNA polymerase Rpc34 subunit 18 130 IPR007832 GO:0005666|GO:0006383
Vimu11g03104 487 SUPERFAMILY "Winged helix" DNA-binding domain 18 87 IPR036390 -
Vimu11g03104 487 Gene3D - 358 414 IPR027417 -
Vimu11g03104 487 Gene3D - 415 460 IPR027417 -
Vimu11g03104 487 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 368 454 IPR027417 -
Vimu11g03104 487 Gene3D - 3 80 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03104 Vimu-Chr11 50527037 50531420 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03104 371 459 Calmodulin-binding Proteins AT2G36910 41.964 1.62e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03104 K03025 - gmx:100789276 304.293