Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03103 ATGCAAAAAAAGATGGTAACTCAACTCGATCTCCATCGCCACTTCCATTCTCTTGGGGCTGGCGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTAATCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTCTTCTTCTTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACACCACCTGGAACTGCTTCAAATCCCCTACCCCCACCTGCTGCTGCATCTCTGCCTGGGCTGTCTCCAAACGATCTTTTGGCATACGAGCGACAACTAGCCATGAGTAAGATGGGGAGCGTGCATGCTGCCTTGATGCATCCCCAAAGCCAACATCCTCTTAAACAAGCAGCAGCCATTGGAGCCAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTATTACCAGTAA 468 0.4936 MQKKMVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSNHAEAALAIQMGNAQSLLLGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSPNDLLAYERQLAMSKMGSVHAALMHPQSQHPLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03103 155 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 70 IPR000504 GO:0003723
Vimu11g03103 155 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 54 IPR000504 GO:0003723
Vimu11g03103 155 SUPERFAMILY RNA-binding domain, RBD 6 79 IPR035979 GO:0003676
Vimu11g03103 155 Gene3D - 3 74 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03103 Vimu-Chr11 50522782 50525113 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03103 K13201 - gmx:100781227 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03103 11 50522782 50525113 Vimu11g03103 11 50522782 50525113 ECH