Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03095 ATGGCGTTGAGTGCCATCTTTTACGAGAAGTTTGATGCTCGGTCGGCGATTGGATCTCTGGGGTTTCTTTCTTTCAGCGATTTCGATCTTAAACCCGAGGCTCGATTGGGGGTGAAAAGATTTGAGTTGGCGCTGGCAATGCCATTATTGTGGTTAGTGAGGAGCTATTCGGCCCTGAGGATATTTACCTTTCCACTTCACTTGCTAGCTATCTTGACAATTCCTATTGTGGATGTTTGTTACGAGCTATGTATACCAAAGCAAGAAAAAAAATCATTCTTCCAAAATGTTATTAGGGAAGAAGGAATTTCAGGTGAGGCTGATTTTGTATTGTGTACTAATTTGTATGGTCTGACAATAATTGTTGTTGTAGAGAAACTTCTTGTATTACTGAGAGATGGCAGAAAGCTCATGGGGATACTTCGCTCTTTTGATCAATTTGCTAATGCAGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGTGATCTCTATTGTGACATCCCTTTGGGTCTCTATGTAATCCGTGGAGAAAATGTTGTTCTAATCGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCTGAACACATGACTCGTGTTTCTACAGCAGAAATCAAGAGGGCACAGAAAGCAGAAAGGGAGGCCTCAGATCTGAAAGGGACTATGAGGAAAAGAATGGAATTCCTTGACTTTGACTAG 699 0.4249 MALSAIFYEKFDARSAIGSLGFLSFSDFDLKPEARLGVKRFELALAMPLLWLVRSYSALRIFTFPLHLLAILTIPIVDVCYELCIPKQEKKSFFQNVIREEGISGEADFVLCTNLYGLTIIVVVEKLLVLLRDGRKLMGILRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRAQKAEREASDLKGTMRKRMEFLDFD 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03095 232 ProSiteProfiles Sm domain profile. 114 189 IPR047575 GO:0003723
Vimu11g03095 232 Gene3D - 122 229 - -
Vimu11g03095 232 CDD LSm1 132 186 IPR034104 GO:0000956
Vimu11g03095 232 SMART Sm3 118 185 IPR001163 -
Vimu11g03095 232 Pfam LSM domain 125 184 IPR001163 -
Vimu11g03095 232 SUPERFAMILY Sm-like ribonucleoproteins 126 187 IPR010920 -
Vimu11g03095 232 PANTHER LSM1 123 226 IPR044642 -
Vimu11g03095 232 FunFam U6 snRNA-associated Sm-like protein LSm1 118 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03095 Vimu-Chr11 50443945 50447956 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03095 K12620 - gmx:100306352 211.46