Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03094 ATGTCTTGGGCAGGCCCTGAGGATATTTACCTTTCCACTTCACTTGCCAGCTATCTTGACAGTGAAGCTGATGTATTTCTCATAGACTTTTATGGCCTTGCACTAATTTTTGTTGTAGAGAAACTTCTTGTATTGCTGAGAGATGGTAGAAAGCTCATGGGAACACTTCGCTCTTTTGATCAATTTGCCAATGCAGTTCTTGAGGGTGCCTGTGAGAGGGTTATTGTTGGCGATCTGTATTGTGACATCCCTTTGGGTCTCTATGTGATCCGCGGGGAAAATGTTGTTCTAATTGGTGAGCTGGACTTGGAGAGGGAGGAACTTCCTGAACACATGACTCGTGTTTCTACAGCAGAAATCAAGAGGGTAGATATTCCATAA 381 0.4357 MSWAGPEDIYLSTSLASYLDSEADVFLIDFYGLALIFVVEKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDLYCDIPLGLYVIRGENVVLIGELDLEREELPEHMTRVSTAEIKRVDIP 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03094 126 PANTHER LSM1 10 121 IPR044642 -
Vimu11g03094 126 Pfam LSM domain 40 99 IPR001163 -
Vimu11g03094 126 Gene3D - 36 125 - -
Vimu11g03094 126 ProSiteProfiles Sm domain profile. 29 104 IPR047575 GO:0003723
Vimu11g03094 126 SMART Sm3 32 100 IPR001163 -
Vimu11g03094 126 FunFam U6 snRNA-associated Sm-like protein LSm1 31 125 - -
Vimu11g03094 126 SUPERFAMILY Sm-like ribonucleoproteins 40 103 IPR010920 -
Vimu11g03094 126 CDD LSm1 41 101 IPR034104 GO:0000956
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03094 Vimu-Chr11 50439747 50440977 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03094 K12620 - gmx:100306352 192.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03094 11 50439747 50440977 Vimu11g03094 11 50439747 50440977 ECH