Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03091 ATGGAGAGAACTTTGGCGATTATAAAACCAGACGGATTAATAGGTAACTACACTGATGATATCAAGAGAACAATTGTAGAATATGGTTTCAGCATTTTTAAGGAAAAGATTGTTCAACTTGATCAAGCCACTGTAGAAAAGTTTTATGCTGAGCACTCTTCAAAATGTTTCTTTTCCAGATTAATAAAATACATGACAAGTGGACCAGTGTTGGTTATGGTCTTGGAGAAGGATAATGCTATTGCTGATTGGCGTGCTTTAATGGGCCCTACTGATGCAAGCAAGGCTAAGATTACTCACCCTCACAGTATCAGAGCAAAATGCGGATTGGATATAGAAAGGAATTGTGTTCATGGTTCAGACTCTCCTAAATCTGCTCAAAGAGAGATTCCATTTTTCTTTCAGGAGCTGTCCGCAGATGTGATTGGAGAGCATGATGAATTGTAG 447 0.3848 MERTLAIIKPDGLIGNYTDDIKRTIVEYGFSIFKEKIVQLDQATVEKFYAEHSSKCFFSRLIKYMTSGPVLVMVLEKDNAIADWRALMGPTDASKAKITHPHSIRAKCGLDIERNCVHGSDSPKSAQREIPFFFQELSADVIGEHDEL 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03091 148 Pfam Nucleoside diphosphate kinase 2 136 IPR034907 -
Vimu11g03091 148 Gene3D - 1 145 IPR036850 -
Vimu11g03091 148 FunFam Nucleoside diphosphate kinase 1 145 - -
Vimu11g03091 148 PRINTS Nucleoside diphosphate kinase signature 68 85 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vimu11g03091 148 PRINTS Nucleoside diphosphate kinase signature 115 134 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vimu11g03091 148 PRINTS Nucleoside diphosphate kinase signature 4 26 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vimu11g03091 148 PRINTS Nucleoside diphosphate kinase signature 48 67 IPR001564 GO:0004550|GO:0006183|GO:0006228|GO:0006241
Vimu11g03091 148 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 1 140 - -
Vimu11g03091 148 SUPERFAMILY Nucleoside diphosphate kinase, NDK 1 137 IPR036850 -
Vimu11g03091 148 ProSitePatterns Nucleoside diphosphate kinases active site. 115 123 IPR023005 -
Vimu11g03091 148 SMART ndk_5 1 141 IPR034907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03091 Vimu-Chr11 50423042 50426274 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03091 K20790 - psat:127126487 256.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03091 11 50423042 50426274 Vimu11g03091 11 50423042 50426274 ECH