Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03074 ATGGCGGTTTCAACTATAGCCTTGTACGCGAGTCCGCCGAGCAGCGTCTGTTCCACGCCTCACCCTTGCCAGATCAACGCTCACGCTTCCTACGACTTCGAATTGGGGTCACGATCTTCGTCGCCGGCGGCTTCGACGGCTCCTCCGTCGACGGCGCAGAAGCCTGTGATGGGCGGACTTTCGTGCCTGTTCTCGTCTCCGGCGGCGGCGGTGAAACACGCGGCGTTGTCGTCGAACTTTACCGGTGAGGAGGACGATTTGAAGGAGTTGGGCAGTTCCTTCTCGTATTCTCCGAGCAAGTTTGGTGGGTCTTCGTGGAAGAGGGATCAGAGTCCCGTGTCTGTTTTTCATGGTCCTGTTTCGTGTAGTGGTAGCAGCAGAAGCCCCATTAGTTCTACCTCTGTGAGAAGTATCAGGAGTGGGACCAGTGGGTTGTTTCATGGGTTTGTGAGGAATGCGTTGGGGTCTTGTTTGGATTATGACTTAGATGCGGGTGATTCATCTGCCGCGCTTGTGGATGAGTTGACCTTCAATTTAGAGGATAATTTGGTGGAGGGTGGGTTTCATTTTGAGCCCTATGCTAGAAAGTTGCTGCTGGGGGCGCAGTTGAGGCACAAGATCTTCTGTGAGGAGTTTGTTATCAAGGCCTTTTGTGAAGCTGAGAAGGCACACAGAGGGCAGATGCGGGCTAGTGGGGATCCTTACTTGCAGCATTGTTTGGAGACCGCTGTGTTGCTGGCTTTGGTTGGTGCCAATTCCACCGTTGTGGCTGCGGGGCTCTTGCATGACACGCTGGATGATGCTTTTCTGACTTACGATTATATATGTGGAGCATTTGGCGCTGGAGTTGCTGATTTAGTTGAAGGGGTATCTAAACTGAGCCACTTAAGCAAACTGGCTCGAGAAAATAATACAGCTTGCAAGTCAGTTGAAGCGGACCGCTTGCACACTATGTTCCTTGCCATGGCAGATGCAAGAGCTGTCCTCATTAAACTGGCAGATCGGTTGCATAATATGATGACACTAGATGCATTGCCTGTGACCAAGCGGCAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCATTGGCCAATCGCTTAGGAATCTCTAGCTGGAAAGAACAATTGGAGAATTTGTGTTTTAAGCATCTCAACCCAAGCCAGCACGAGGAGCTTTCTTCAAAGCTTGTGGAGTCGTACGATGATGCAATGATTACTTGTGCGATAGAGAGATTAGAGCAAGCCCTTAAAGATGAAGGCATATCTTATAATGTCATTTCTGGGCGGCACAAGAGCTTGTATAGCGTTTACTGCAAAATGTTGAAGAAGAAACTTACCATTGATGATATCCATGACATTTATGGACTGCGCTTGATTGTTGACAAAGAAGAAGACTGTTATAAAGCCTTAACAACTGTCCATCGGTTATGGTCTGAGGTGCCTGGAAAGCTGAAAGATTACATATGTCGCCCCAAGTTCAATGGATACCAATCTCTGCATACTGTGGTGATGGCTGAAGGCAACGTTCCCCTGGAAGTGCAAATTCGAACCAAAGACATGCACTTGCAAGCAGAATTTGGATTTGCAGCTCACTGGAGATACAAGGAAGACGATTGCCAACATTCTTCATTTGTGCTTCAGATGGTGGAGTGGGCTCGATGGGTTGTTACCTGGCAGTGCGAAGCAATGAGTGGAGACTGTTCTTCTGTTAGATATGCTGATTCAGTGAAGCCTCCATGCAAGTTCCCTTCTCATGCTGCCGATTGCCCATATTCCTATAGGCCCGATTGTGGTCAGAACGGGCCCGTGTTTGTCATCATGATCGAGAATGACAAGATGTCTGTTCAAGAATTCAGTGCAAACTCAACGATATTGGATTTGTTGGAGAGAGCTGGGCGTGCAAGCTCAAGGTTGACAACATATAGGTTCCCATTGAAGGAAGAGTTGAGGCCAAGGCTGAATCACAAGCCAGTGAGTGATCCAAAAAGCAAGTTGAAGATGGGAGATGTTATTGAACTTACACCAGCCATACCTGACAAGTATCTTACAGAATACAGGGAAGAAATCCAGCGTATGTATGATCGAGGGCTAACCGTATCAACCATGGGAACTTCTTCTTCAAGTACCATGGTTGGCTCAAGAAGTTGA 2151 0.4807 MAVSTIALYASPPSSVCSTPHPCQINAHASYDFELGSRSSSPAASTAPPSTAQKPVMGGLSCLFSSPAAAVKHAALSSNFTGEEDDLKELGSSFSYSPSKFGGSSWKRDQSPVSVFHGPVSCSGSSRSPISSTSVRSIRSGTSGLFHGFVRNALGSCLDYDLDAGDSSAALVDELTFNLEDNLVEGGFHFEPYARKLLLGAQLRHKIFCEEFVIKAFCEAEKAHRGQMRASGDPYLQHCLETAVLLALVGANSTVVAAGLLHDTLDDAFLTYDYICGAFGAGVADLVEGVSKLSHLSKLARENNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPVTKRQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPSQHEELSSKLVESYDDAMITCAIERLEQALKDEGISYNVISGRHKSLYSVYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTTVHRLWSEVPGKLKDYICRPKFNGYQSLHTVVMAEGNVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSGDCSSVRYADSVKPPCKFPSHAADCPYSYRPDCGQNGPVFVIMIENDKMSVQEFSANSTILDLLERAGRASSRLTTYRFPLKEELRPRLNHKPVSDPKSKLKMGDVIELTPAIPDKYLTEYREEIQRMYDRGLTVSTMGTSSSSTMVGSRS 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03074 716 Gene3D Beta Polymerase, domain 2 390 519 IPR043519 -
Vimu11g03074 716 ProSiteProfiles S4 RNA-binding domain profile. 653 690 - -
Vimu11g03074 716 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 112 680 - -
Vimu11g03074 716 Pfam Region found in RelA / SpoT proteins 429 538 IPR007685 GO:0015969
Vimu11g03074 716 ProSiteProfiles HD domain profile. 235 339 IPR006674 -
Vimu11g03074 716 SMART hd_13 231 348 IPR003607 -
Vimu11g03074 716 SUPERFAMILY Nucleotidyltransferase 376 565 IPR043519 -
Vimu11g03074 716 CDD HDc 233 361 IPR003607 -
Vimu11g03074 716 SUPERFAMILY HD-domain/PDEase-like 196 386 - -
Vimu11g03074 716 FunFam GTP pyrophosphokinase RelA 197 386 - -
Vimu11g03074 716 FunFam GTP pyrophosphokinase RelA 387 519 - -
Vimu11g03074 716 CDD NT_Rel-Spo_like 408 527 IPR007685 GO:0015969
Vimu11g03074 716 Pfam HD domain 220 370 - -
Vimu11g03074 716 SMART RelA_SpoT_2 429 539 IPR007685 GO:0015969
Vimu11g03074 716 Gene3D Hypothetical protein af1432 204 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03074 Vimu-Chr11 50257609 50260848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03074 230 536 EF-hand Containing Proteins AT3G17470 31.003 6.29e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03074 K00951 - gmx:100787301 1269.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03074 11 50257609 50260848 Vimu11g03074 11 50257609 50260848 ECH